The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli

(2016) Tomohiro Shimada et al.   MICROBIOLOGY-SGM

Novel heterologous bacterial system reveals enhanced susceptibility to DNA damage mediated by yqgF, a nearly ubiquitous and often essential gene

(2016) Dylan J. McClung et al.   MICROBIOLOGY-SGM

Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol

(2016) Yuki Yamanaka et al.   MICROBIOLOGY-SGM

YjeH Is a Novel Exporter of l-Methionine and Branched-Chain Amino Acids in Escherichia coli

(2015) Qian Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

YehZYXW of Escherichia coli Is a Low-Affinity, Non-Osmoregulatory Betaine-Specific ABC Transporter

(2015) Shenhui Lang et al.   BIOCHEMISTRY

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

(2015) Peter D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

Physiological Roles and Adverse Effects of the Two Cystine Importers of Escherichia coli

(2015) Karin R. Chonoles Imlay et al.   JOURNAL OF BACTERIOLOGY

YjjQ Represses Transcription offlhDCand Additional Loci in Escherichia coli

(2015) Helene Wiebe et al.   JOURNAL OF BACTERIOLOGY

Distinct Paths for Basic Amino Acid Export in Escherichia coli: YbjE (LysO) Mediates Export of l-Lysine

(2015) Amit Pathania et al.   JOURNAL OF BACTERIOLOGY

Regulatory role of transcription factor SutR (YdcN) in sulfur utilization in Escherichia coli

(2015) Kaneyoshi Yamamoto et al.   MICROBIOLOGY-SGM

Cooperative regulation of the common target genes between H2O2-sensing YedVW and Cu2+-sensing CusSR in Escherichia coli

(2015) Hiroyuki Urano et al.   MICROBIOLOGY-SGM

Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons

(2015) Alexandra Gennaris et al.   NATURE

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2015) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Novel Functions and Regulation of Cryptic Cellobiose Operons in Escherichia coli

(2015) Vinuselvi Parisutham et al.   PLoS One

The Escherichia coli CysZ is a pH dependent sulfate transporter that can be inhibited by sulfite

(2014) Li Zhang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Induction of theEscherichia coli yijEgene expression by cystine

(2014) Kaneyoshi Yamamoto et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

(2014) Daniel S Weaver et al.   BMC Systems Biology

Bacterial Genus-Specific Tolerance for YdcI Expression

(2014) Laura Solomon et al.   CURRENT MICROBIOLOGY

Susceptibility ofEscherichia colito the toxic L-proline analogue L-selenaproline is dependent on two L-cystine transport systems

(2014) C.E. Deutch et al.   JOURNAL OF APPLIED MICROBIOLOGY

Coordinate Regulation of the Suf and Isc Fe-S Cluster Biogenesis Pathways by IscR Is Essential for Viability of Escherichia coli

(2014) E. L. Mettert et al.   JOURNAL OF BACTERIOLOGY

The Highly Conserved MraZ Protein Is a Transcriptional Regulator in Escherichia coli

(2014) J. M. Eraso et al.   JOURNAL OF BACTERIOLOGY

Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle

(2014) Karin Denger et al.   NATURE

SATP (YaaH), a succinate–acetate transporter protein inEscherichia coli

(2013) Joana Sá-Pessoa et al.   BIOCHEMICAL JOURNAL

Novel regulator PgrR for switch control of peptidoglycan recycling inEscherichia coli

(2013) Tomohiro Shimada et al.   GENES TO CELLS

Structural Basis for Phosphorylated Autoinducer-2 Modulation of the Oligomerization State of the Global Transcription Regulator LsrR fromEscherichia coli

(2013) Minhao Wu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The RclR Protein Is a Reactive Chlorine-specific Transcription Factor inEscherichia coli

(2013) Benjamin W. Parker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Functional Identification of the Hypoxanthine/Guanine Transporters YjcD and YgfQ and the Adenine Transporters PurP and YicO ofEscherichia coliK-12

(2013) Konstantinos Papakostas et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

YdfH Identified as a Repressor ofrspAby the Use of Reduced GenomeEscherichia coliMGF-01

(2012) Yuri SAKIHAMA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Identification of a Target Gene and Activating Stimulus for the YpdA/YpdB Histidine Kinase/Response Regulator System in Escherichia coli

(2012) L. Fried et al.   JOURNAL OF BACTERIOLOGY

Regulation of iron-sulphur cluster homeostasis through transcriptional control of the Isc pathway by [2Fe-2S]-IscR inEscherichia coli

(2012) Jennifer L. Giel et al.   MOLECULAR MICROBIOLOGY

TheEscherichia coliSLC26 homologue YchM (DauA) is a C4-dicarboxylic acid transporter

(2012) Eleni Karinou et al.   MOLECULAR MICROBIOLOGY

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Electronic structure of the unique [4Fe-3S] cluster in O2-tolerant hydrogenases characterized by 57Fe Mossbauer and EPR spectroscopy

(2012) M.-E. Pandelia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel regulator RcdA of thecsgDgene encoding the master regulator of biofilm formation inEscherichia coli

(2012) Tomohiro Shimada et al.   MicrobiologyOpen

Sulfoquinovose degraded by pure cultures of bacteria with release of C3-organosulfonates: complete degradation in two-member communities

(2011) Karin Denger et al.   FEMS MICROBIOLOGY LETTERS

Newly Identified Genetic Variations in Common Escherichia coli MG1655 Stock Cultures

(2011) P. L. Freddolino et al.   JOURNAL OF BACTERIOLOGY

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH