How sample heterogeneity can obscure the signal of microbial interactions

Fundamental contradictions among observational and experimental estimates of non-trophic species interactions

(2018) Allison K. Barner et al.   ECOLOGY

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Cell-to-cell bacterial interactions promoted by drier conditions on soil surfaces

(2018) Robin Tecon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms

(2018) Gabriel E. Leventhal et al.   Nature Microbiology

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Microbiome interactions shape host fitness

(2018) Alison L. Gould et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems

(2018) Mina Bižić-Ionescu et al.   Frontiers in Microbiology

Microbial life on a sand grain: from bulk sediment to single grains

(2017) David Probandt et al.   ISME Journal

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Mapping the ecological networks of microbial communities

(2017) Yandong Xiao et al.   Nature Communications

Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions

(2017) Babak Momeni et al.   eLife

Growth-altering microbial interactions are responsive to chemical context

(2017) Angela Liu et al.   PLoS One

Ecological Network Inference From Long-Term Presence-Absence Data

(2017) Elizabeth L. Sander et al.   Scientific Reports

Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

Inferring species interactions from co-occurrence data with Markov networks

(2016) David J. Harris   ECOLOGY

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Resource Availability Modulates the Cooperative and Competitive Nature of a Microbial Cross-Feeding Mutualism

(2016) Tim A. Hoek et al.   PLOS BIOLOGY

A Single-Granule-Level Approach Reveals Ecological Heterogeneity in an Upflow Anaerobic Sludge Blanket Reactor

(2016) Kyohei Kuroda et al.   PLoS One

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Aerobic Granules: Microbial Landscape and Architecture, Stages, and Practical Implications

(2014) Graciela Gonzalez-Gil et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

How context dependent are species interactions?

(2014) Scott A. Chamberlain et al.   ECOLOGY LETTERS

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Context-Dependent Competition in a Model Gut Bacterial Community

(2013) Eric J. de Muinck et al.   PLoS One

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere

(2012) Mitja N P Remus-Emsermann et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Scale transition theory: Its aims, motivations and predictions

(2011) Peter Chesson   Ecological Complexity

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Spandrels and a pervasive problem of evidence

(2008) Patrick Forber   BIOLOGY & PHILOSOPHY

Biostructure of Fecal Microbiota in Healthy Subjects and Patients With Chronic Idiopathic Diarrhea

(2008) Alexander Swidsinski et al.   GASTROENTEROLOGY

The interaction between predation and competition

(2008) Peter Chesson et al.   NATURE

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE