Inferring species interactions from co-occurrence data with Markov networks

A Strong Test of the Maximum Entropy Theory of Ecology

(2015) Xiao Xiao et al.   AMERICAN NATURALIST

Learning the Structure of Mixed Graphical Models

(2015) Jason D. Lee et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Generating realistic assemblages with a joint species distribution model

(2015) David J. Harris   Methods in Ecology and Evolution

Structure estimation for discrete graphical models: Generalized covariance matrices and their inverses

(2014) Po-Ling Loh et al.   ANNALS OF STATISTICS

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

The checkered history of checkerboard distributions

(2013) Edward F. Connor et al.   ECOLOGY

A probabilistic model for analysing species co-occurrence

(2012) Joseph A. Veech   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Occupancy Is Nine-Tenths of the Law: Occupancy Rates Determine the Homogenizing and Differentiating Effects of Exotic Species

(2011) David J. Harris et al.   AMERICAN NATURALIST

Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods

(2010) Ali Faisal et al.   Ecological Informatics

A weakly informative default prior distribution for logistic and other regression models

(2009) Andrew Gelman et al.   Annals of Applied Statistics

Inferring plant ecosystem organization from species occurrences

(2009) S. Azaele et al.   JOURNAL OF THEORETICAL BIOLOGY

The empirical Bayes approach as a tool to identify non-random species associations

(2009) Nicholas J. Gotelli et al.   OECOLOGIA