Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria
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Title
Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-04-26
DOI
10.3389/fmicb.2019.00893
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Note: Only part of the references are listed.- Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica
- (2019) Alejandro Arce-Rodríguez et al. EXTREMOPHILES
- Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification
- (2019) Jerald Conrad Ibal et al. PLoS One
- Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide
- (2019) Zahra F. Islam et al. ISME Journal
- Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
- (2018) Martina Adamek et al. BMC GENOMICS
- Antibiotic Hybrids: the Next Generation of Agents and Adjuvants against Gram-Negative Pathogens?
- (2018) Ronald Domalaon et al. CLINICAL MICROBIOLOGY REVIEWS
- Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides
- (2018) Viktória Lázár et al. Nature Microbiology
- Genome mining, isolation, chemical synthesis and biological evaluation of a novel lanthipeptide, tikitericin, from the extremophilic microorganism Thermogemmatispora strain T81
- (2018) Buzhe Xu et al. Chemical Science
- Insight Into the Diversity and Possible Role of Plasmids in the Adaptation of Psychrotolerant and Metalotolerant Arthrobacter spp. to Extreme Antarctic Environments
- (2018) Krzysztof Romaniuk et al. Frontiers in Microbiology
- Dictyobacter aurantiacus gen. nov., sp. nov., a member of the family Ktedonobacteraceae, isolated from soil, and emended description of the genus Thermosporothrix
- (2017) Shuhei Yabe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Antimicrobials Inspired by Nonribosomal Peptide Synthetase Gene Clusters
- (2017) Xavier Vila-Farres et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Diversity of Ktedonobacteria with Actinomycetes-Like Morphology in Terrestrial Environments
- (2017) Shuhei Yabe et al. MICROBES AND ENVIRONMENTS
- Actinomycetes: still a source of novel antibiotics
- (2017) Olga Genilloud NATURAL PRODUCT REPORTS
- Antibiotics from Gram-negative bacteria: a comprehensive overview and selected biosynthetic highlights
- (2017) J. Masschelein et al. NATURAL PRODUCT REPORTS
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter
- (2017) Zachary Landry et al. mBio
- Dissemination of antibiotic resistance genes from antibiotic producers to pathogens
- (2017) Xinglin Jiang et al. Nature Communications
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- (2017) Lynn M. Naughton et al. Frontiers in Microbiology
- Interdomain and Intermodule Organization in Epimerization Domain Containing Nonribosomal Peptide Synthetases
- (2016) Wei-Hung Chen et al. ACS Chemical Biology
- Effects of varying CO2 flows on bacterial communities in mesocosms created from two soils
- (2016) Luis E. Sáenz de Miera et al. International Journal of Greenhouse Gas Control
- Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov.
- (2016) Liwei Sun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- A hybrid polyketide–nonribosomal peptide in nematodes that promotes larval survival
- (2016) Qingyao Shou et al. Nature Chemical Biology
- Discovery of MRSA active antibiotics using primary sequence from the human microbiome
- (2016) John Chu et al. Nature Chemical Biology
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Microbial Community Structure and Arsenic Biogeochemistry in an Acid Vapor-Formed Spring in Tengchong Geothermal Area, China
- (2016) Zhou Jiang et al. PLoS One
- Structural and mutational analysis of the nonribosomal peptide synthetase heterocyclization domain provides insight into catalysis
- (2016) Kristjan Bloudoff et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Natural Products and the Gene Cluster Revolution
- (2016) Paul R. Jensen TRENDS IN MICROBIOLOGY
- Antibiotic Resistance and Regulation of the Gram-Negative Bacterial Outer Membrane Barrier by Host Innate Immune Molecules
- (2016) Samuel I. Miller mBio
- The structure and diversity of human, animal and environmental resistomes
- (2016) Chandan Pal et al. Microbiome
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- BPGA- an ultra-fast pan-genome analysis pipeline
- (2016) Narendrakumar M. Chaudhari et al. Scientific Reports
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Discovery of microbial natural products by activation of silent biosynthetic gene clusters
- (2015) Peter J. Rutledge et al. NATURE REVIEWS MICROBIOLOGY
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
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- (2015) Chad W. Johnston et al. Nature Communications
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- (2015) Bradley M. Tebo et al. Frontiers in Microbiology
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- (2014) Jin-Soo Park et al. CHEMBIOCHEM
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- (2014) Rochelle M. Soo et al. Genome Biology and Evolution
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- (2014) Luis E. Sáenz de Miera et al. International Journal of Greenhouse Gas Control
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- (2014) Manuel A. Ortega et al. NATURE
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- (2014) Aaron E. Darling et al. PeerJ
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- (2013) Panchanathan Manivasagan et al. MICROBIOLOGICAL RESEARCH
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- Recently Deglaciated High-Altitude Soils of the Himalaya: Diverse Environments, Heterogenous Bacterial Communities and Long-Range Dust Inputs from the Upper Troposphere
- (2013) Blaz Stres et al. PLoS One
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- (2013) Kui Han et al. Scientific Reports
- Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.
- (2012) Radhey S. Gupta et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Thoughts and facts about antibiotics: Where we are now and where we are heading
- (2012) János Bérdy JOURNAL OF ANTIBIOTICS
- The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity
- (2012) Nadine Ziemert et al. PLoS One
- Evolution of lanthipeptide synthetases
- (2012) Q. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lava Cave Microbial Communities Within Mats and Secondary Mineral Deposits: Implications for Life Detection on Other Planets
- (2011) D.E. Northup et al. ASTROBIOLOGY
- Fatty Acyl-AMP Ligase Involvement in the Production of Alkylresorcylic Acid by a Myxococcus xanthus Type III Polyketide Synthase
- (2011) Takayuki Hayashi et al. CHEMBIOCHEM
- NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
- (2011) Marc Röttig et al. NUCLEIC ACIDS RESEARCH
- Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
- (2011) Yun-juan Chang et al. Standards in Genomic Sciences
- Thermogemmatispora onikobensis gen. nov., sp. nov. and Thermogemmatispora foliorum sp. nov., isolated from fallen leaves on geothermal soils, and description of Thermogemmatisporaceae fam. nov. and Thermogemmatisporales ord. nov. within the class Ktedonobacteria
- (2010) S. Yabe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus
- (2010) B. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses
- (2010) Pablo Yarza et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater
- (2009) W. M. Moe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Thermosporothrix hazakensis gen. nov., sp. nov., isolated from compost, description of Thermosporotrichaceae fam. nov. within the class Ktedonobacteria Cavaletti et al. 2007 and emended description of the class Ktedonobacteria
- (2009) S. Yabe et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Microbial drug discovery: 80 years of progress
- (2009) Arnold L Demain et al. JOURNAL OF ANTIBIOTICS
- Evolution of metabolic diversity: Insights from microbial polyketide synthases
- (2009) Holger Jenke-Kodama et al. PHYTOCHEMISTRY
- Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum
- (2009) Dongying Wu et al. PLoS One
- Mammalian Long-Chain Acyl-CoA Synthetases
- (2008) Eric Soupene et al. EXPERIMENTAL BIOLOGY AND MEDICINE
- Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium
- (2008) Klas Flärdh et al. NATURE REVIEWS MICROBIOLOGY
- The CGView Server: a comparative genomics tool for circular genomes
- (2008) J. R. Grant et al. NUCLEIC ACIDS RESEARCH
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