Islands of retroelements are major components of Drosophila centromeres
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Islands of retroelements are major components of Drosophila centromeres
Authors
Keywords
Centromeres, Fluorescent in situ hybridization, Drosophila melanogaster, Islands, Invertebrate genomics, Chromatin, Sequence assembly tools, Drosophila
Journal
PLOS BIOLOGY
Volume 17, Issue 5, Pages e3000241
Publisher
Public Library of Science (PLoS)
Online
2019-05-15
DOI
10.1371/journal.pbio.3000241
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Transposable elements: genome innovation, chromosome diversity, and centromere conflict
- (2018) Savannah J. Klein et al. CHROMOSOME RESEARCH
- Centromeric retrotransposons and centromere function
- (2018) Gernot G Presting CURRENT OPINION IN GENETICS & DEVELOPMENT
- Birth, evolution, and transmission of satellite-free mammalian centromeric domains
- (2018) Solomon G. Nergadze et al. GENOME RESEARCH
- Centromere transcription allows CENP-A to transit from chromatin association to stable incorporation
- (2018) Georg O.M. Bobkov et al. JOURNAL OF CELL BIOLOGY
- Non-B-Form DNA Is Enriched at Centromeres
- (2018) Sivakanthan Kasinathan et al. MOLECULAR BIOLOGY AND EVOLUTION
- Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny
- (2018) Kevin H -C Wei et al. MOLECULAR BIOLOGY AND EVOLUTION
- Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
- (2018) Yuki Ogiyama et al. MOLECULAR CELL
- Linear assembly of a human centromere on the Y chromosome
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- Adaptation and conservation insights from the koala genome
- (2018) Rebecca N. Johnson et al. NATURE GENETICS
- RNAi is a critical determinant of centromere evolution in closely related fungi
- (2018) Vikas Yadav et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
- (2018) Brian J. Beliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide analysis of gene regulation mechanisms during Drosophila spermatogenesis
- (2018) Petr P. Laktionov et al. Epigenetics & Chromatin
- Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing
- (2018) Edwin A. Solares et al. G3-Genes Genomes Genetics
- Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome
- (2018) Ching-Ho Chang et al. GENETICS
- Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster
- (2017) Daniel E. Khost et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Co-evolving CENP-A and CAL1 Domains Mediate Centromeric CENP-A Deposition across Drosophila Species
- (2016) Leah Rosin et al. DEVELOPMENTAL CELL
- Inbreeding drives maize centromere evolution
- (2016) Kevin L. Schneider et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Analysis of Satellite DNA in the Drosophila melanogaster Species Complex
- (2016) Madhav Jagannathan et al. G3-Genes Genomes Genetics
- High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events
- (2016) Thomas K. Wolfgruber et al. Frontiers in Plant Science
- Centromeric Alpha-Satellite DNA Adopts Dimeric i-Motif Structures Capped by AT Hoogsteen Base Pairs
- (2015) Miguel Garavís et al. CHEMISTRY-A EUROPEAN JOURNAL
- Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription
- (2015) Chin-Chi Chen et al. DEVELOPMENTAL CELL
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- The molecular basis for centromere identity and function
- (2015) Kara L. McKinley et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments
- (2015) Dhawal Jain et al. NUCLEIC ACIDS RESEARCH
- The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs
- (2015) Miguel Garavís et al. Scientific Reports
- Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle
- (2015) Florence Gutzwiller et al. G3-Genes Genomes Genetics
- Sequence Features and Transcriptional Stalling within Centromere DNA Promote Establishment of CENP-A Chromatin
- (2015) Sandra Catania et al. PLoS Genetics
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Incomplete replication generates somatic DNA alterations withinDrosophilapolytene salivary gland cells
- (2014) Will Yarosh et al. GENES & DEVELOPMENT
- Centromere reference models for human chromosomes X and Y satellite arrays
- (2014) K. H. Miga et al. GENOME RESEARCH
- Comparative analysis of the transcriptome across distant species
- (2014) Mark B. Gerstein et al. NATURE
- Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres
- (2014) H. Zhang et al. PLANT CELL
- Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
- (2014) Rajiv C. McCoy et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Correlated variation and population differentiation in satellite DNA abundance among lines ofDrosophila melanogaster
- (2014) Kevin H.-C. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA copy number evolution in Drosophila cell lines
- (2014) Hangnoh Lee et al. GENOME BIOLOGY
- CrossMap: a versatile tool for coordinate conversion between genome assemblies
- (2013) Hao Zhao et al. BIOINFORMATICS
- Tandem repeats derived from centromeric retrotransposons
- (2013) Anupma Sharma et al. BMC GENOMICS
- Hypermorphic expression of centromeric retroelement-encoded small RNAs impairs CENP-A loading
- (2013) Dawn M. Carone et al. CHROMOSOME RESEARCH
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Breaking the HAC Barrier: Histone H3K9 acetyl/methyl balance regulates CENP-A assembly
- (2012) Jun-ichirou Ohzeki et al. EMBO JOURNAL
- Centromere Remodeling in Hoolock leuconedys (Hylobatidae) by a New Transposable Element Unique to the Gibbons
- (2012) Lucia Carbone et al. Genome Biology and Evolution
- Genome sequencing reveals complex speciation in the Drosophila simulans clade
- (2012) D. Garrigan et al. GENOME RESEARCH
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
- (2012) Stefan Bonn et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP
- (2012) Stefan Bonn et al. Nature Protocols
- The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement
- (2012) Song Luo et al. PLoS One
- Active transcription and essential role of RNA polymerase II at the centromere during mitosis
- (2012) F. L. Chan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
- (2012) B. J. Beliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain
- (2012) Nicole C. Riddle et al. PLoS Genetics
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- Factors That Promote H3 Chromatin Integrity during Transcription Prevent Promiscuous Deposition of CENP-ACnp1 in Fission Yeast
- (2012) Eun Shik Choi et al. PLoS Genetics
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Identification of Noncoding Transcripts from within CENP-A Chromatin at Fission Yeast Centromeres
- (2011) Eun Shik Choi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Recent Amplification of the Kangaroo Endogenous Retrovirus, KERV, Limited to the Centromere
- (2011) G. C. Ferreri et al. JOURNAL OF VIROLOGY
- Drosophila CENH3 Is Sufficient for Centromere Formation
- (2011) M. J. Mendiburo et al. SCIENCE
- Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
- (2011) Marilyn B Renfree et al. GENOME BIOLOGY
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
- (2010) N. C. Riddle et al. GENOME RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty
- (2009) Mark S Longo et al. BMC GENOMICS
- Evolution of ribosomal DNA-derived satellite repeat in tomato genome
- (2009) Sung-Hwan Jo et al. BMC PLANT BIOLOGY
- LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin
- (2009) Anderly C. Chueh et al. PLoS Genetics
- Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres
- (2008) Zhao Liu et al. CHROMOSOMA
- Genome-wide analysis reveals a cell cycle–dependent mechanism controlling centromere propagation
- (2008) Sylvia Erhardt et al. JOURNAL OF CELL BIOLOGY
- Design and analysis of ChIP-seq experiments for DNA-binding proteins
- (2008) Peter V Kharchenko et al. NATURE BIOTECHNOLOGY
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
- Epigenetic regulation of centromeric chromatin: old dogs, new tricks?
- (2008) Robin C. Allshire et al. NATURE REVIEWS GENETICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search