Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-05-17
DOI
10.1093/nar/gkz471
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor
- (2018) Klára Šmídová et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor σJ modulates promoter recognition
- (2017) Kapil Goutam et al. NUCLEIC ACIDS RESEARCH
- RefSeq: an update on prokaryotic genome annotation and curation
- (2017) Daniel H Haft et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome
- (2017) Judith S. Bauer et al. RNA Biology
- Streptomyces Exploration: Competition, Volatile Communication and New Bacterial Behaviours
- (2017) Stephanie E. Jones et al. TRENDS IN MICROBIOLOGY
- Connecting Metabolic Pathways: Sigma Factors in Streptomyces spp.
- (2017) Di Sun et al. Frontiers in Microbiology
- Promoter Recognition by Extracytoplasmic Function σ Factors: Analyzing DNA and Protein Interaction Motifs
- (2016) Jelena Guzina et al. JOURNAL OF BACTERIOLOGY
- Effects of trace metal ions on secondary metabolism and the morphological development of streptomycetes
- (2016) Fabricio M. Locatelli et al. Metallomics
- Local and global regulation of transcription initiation in bacteria
- (2016) Douglas F. Browning et al. NATURE REVIEWS MICROBIOLOGY
- Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis
- (2016) Rinki Chauhan et al. Nature Communications
- The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)
- (2016) Yujin Jeong et al. Nature Communications
- A Novel Approach for Gene Expression Optimization through Native Promoter and 5′ UTR Combinations Based on RNA-seq, Ribo-seq, and TSS-seq of Streptomyces coelicolor
- (2016) Jeong Sang Yi et al. ACS Synthetic Biology
- Bacterial antisense RNAs are mainly the product of transcriptional noise
- (2016) V. Llorens-Rico et al. Science Advances
- Comparative Genomics Reveals the Core and Accessory Genomes of Streptomyces Species
- (2015) Ji-Nu Kim et al. JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
- Metabolic engineering of antibiotic factories: new tools for antibiotic production in actinomycetes
- (2015) Tilmann Weber et al. TRENDS IN BIOTECHNOLOGY
- Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective
- (2014) Andrey Feklístov et al. Annual Review of Microbiology
- Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme
- (2014) Ritwika S. Basu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A comparison of key aspects of gene regulation inStreptomyces coelicolorandEscherichia coliusing nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing
- (2014) David A. Romero et al. MOLECULAR MICROBIOLOGY
- Ribosome profiling: new views of translation, from single codons to genome scale
- (2014) Nicholas T. Ingolia NATURE REVIEWS GENETICS
- Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites
- (2013) Kyu-Sang Hwang et al. BIOTECHNOLOGY ADVANCES
- Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor
- (2013) M. M. Rudolph et al. MICROBIOLOGY-SGM
- An alternative sigma factor governs the principal sigma factor inStreptomyces griseus
- (2013) Hiroshi Otani et al. MOLECULAR MICROBIOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis
- (2013) Teresa Cortes et al. Cell Reports
- Antibiotics produced by Streptomyces
- (2012) Rudi Emerson de Lima Procópio et al. Brazilian Journal of Infectious Diseases
- Biosynthesis of clavam metabolites
- (2012) Susan E. Jensen JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
- (2012) C. Kroger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria
- (2012) R. Raghavan et al. mBio
- Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes
- (2011) Xiaobin Zheng et al. BMC GENOMICS
- Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?
- (2010) Maureen Kiley Thomason et al. Annual Review of Genetics
- The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways
- (2010) Marnix H. Medema et al. Genome Biology and Evolution
- Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites
- (2010) J. Y. Song et al. JOURNAL OF BACTERIOLOGY
- Identification of regulatory RNAs in Bacillus subtilis
- (2010) Irnov Irnov et al. NUCLEIC ACIDS RESEARCH
- Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus
- (2010) B. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis
- (2010) Wenqing Chen et al. Protein & Cell
- Two Distinct Major Facilitator Superfamily Drug Efflux Pumps Mediate Chloramphenicol Resistance in Streptomyces coelicolor
- (2009) J. J. Vecchione et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The sigma factors of Mycobacterium tuberculosis: regulation of the regulators
- (2009) Preeti Sachdeva et al. FEBS Journal
- Genomic basis for natural product biosynthetic diversity in the actinomycetes
- (2009) Markus Nett et al. NATURAL PRODUCT REPORTS
- SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics
- (2008) Fabrice Touzain et al. BMC BIOINFORMATICS
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started