The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor σJ modulates promoter recognition

To ∼P or Not to ∼P? Non-canonical activation by two-component response regulators

(2016) Stuti K. Desai et al.   MOLECULAR MICROBIOLOGY

Dali server update

(2016) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

In depth analysis of the mechanism of action of metal-dependent sigma factors: characterization of CorE2 fromMyxococcus xanthus

(2016) Francisco Javier Marcos-Torres et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

(2016) Vikram Alva et al.   NUCLEIC ACIDS RESEARCH

Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis

(2016) Rinki Chauhan et al.   Nature Communications

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Comparative Sigma Factor-mRNA Levels in Mycobacterium marinum under Stress Conditions and during Host Infection

(2015) B. M. Fredrik Pettersson et al.   PLoS One

Crystallographic studies of the extracytoplasmic function σ factor σJfromMycobacterium tuberculosis

(2015) Kapil Goutam et al.   Acta Crystallographica Section F-Structural Biology Communications

The Crystal Structure of the Anti-σ Factor CnrY in Complex with the σ Factor CnrH Shows a New Structural Class of Anti-σ Factors Targeting Extracytoplasmic Function σ Factors

(2014) Antoine P. Maillard et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural basis for −10 promoter element melting by environmentally induced sigma factors

(2014) Sébastien Campagne et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis for the redox sensitivity of theMycobacterium tuberculosisSigK–RskA σ–anti-σ complex

(2014) Jinal Shukla et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Filling out the structural map of the NTF2-like superfamily

(2013) Ruth Y Eberhardt et al.   BMC BIOINFORMATICS

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

(2013) Gershon Celniker et al.   ISRAEL JOURNAL OF CHEMISTRY

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of σ-factor activity by proteolysis

(2013) Ravi K. Jaiswal et al.   NUCLEIC ACIDS RESEARCH

Identification of Proteins Likely To Be Involved in Morphogenesis, Cell Division, and Signal Transduction in Planctomycetes by Comparative Genomics

(2012) Christian Jogler et al.   JOURNAL OF BACTERIOLOGY

Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain

(2012) Tina Wecke et al.   MicrobiologyOpen

iMOSFLM: a new graphical interface for diffraction-image processing withMOSFLM

(2011) T. Geoff G. Battye et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

CorE from Myxococcus xanthus Is a Copper-Dependent RNA Polymerase Sigma Factor

(2011) Nuria Gómez-Santos et al.   PLoS Genetics

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Decision-making in structure solution using Bayesian estimates of map quality: thePHENIX AutoSolwizard

(2009) Thomas C. Terwilliger et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The sigma factors of Mycobacterium tuberculosis: regulation of the regulators

(2009) Preeti Sachdeva et al.   FEBS Journal

Direct stimulus perception and transcription activation by a membrane-bound DNA binding protein

(2009) Susanne Gebhard et al.   MOLECULAR MICROBIOLOGY

The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family

(2009) Anna Staroń et al.   MOLECULAR MICROBIOLOGY

Cascade of extracytoplasmic function sigma factors inMycobacterium tuberculosis: identification of a σJ-dependent promoter upstream ofsigI

(2008) Dagmar Homerova et al.   FEMS MICROBIOLOGY LETTERS

The GAF-Like-Domain-Containing Transcriptional Regulator DfdR Is a Sensor Protein for Dibenzofuran and Several Hydrophobic Aromatic Compounds

(2008) T. Iida et al.   JOURNAL OF BACTERIOLOGY

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

(2008) Gerrit Langer et al.   Nature Protocols

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Regulation of the SigH stress response regulon by an essential protein kinase in Mycobacterium tuberculosis

(2008) S. T. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA