Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome

DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor

(2018) Klára Šmídová et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor σJ modulates promoter recognition

(2017) Kapil Goutam et al.   NUCLEIC ACIDS RESEARCH

RefSeq: an update on prokaryotic genome annotation and curation

(2017) Daniel H Haft et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome

(2017) Judith S. Bauer et al.   RNA Biology

Streptomyces Exploration: Competition, Volatile Communication and New Bacterial Behaviours

(2017) Stephanie E. Jones et al.   TRENDS IN MICROBIOLOGY

Connecting Metabolic Pathways: Sigma Factors in Streptomyces spp.

(2017) Di Sun et al.   Frontiers in Microbiology

Promoter Recognition by Extracytoplasmic Function σ Factors: Analyzing DNA and Protein Interaction Motifs

(2016) Jelena Guzina et al.   JOURNAL OF BACTERIOLOGY

Effects of trace metal ions on secondary metabolism and the morphological development of streptomycetes

(2016) Fabricio M. Locatelli et al.   Metallomics

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis

(2016) Rinki Chauhan et al.   Nature Communications

The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)

(2016) Yujin Jeong et al.   Nature Communications

A Novel Approach for Gene Expression Optimization through Native Promoter and 5′ UTR Combinations Based on RNA-seq, Ribo-seq, and TSS-seq of Streptomyces coelicolor

(2016) Jeong Sang Yi et al.   ACS Synthetic Biology

Bacterial antisense RNAs are mainly the product of transcriptional noise

(2016) V. Llorens-Rico et al.   Science Advances

Comparative Genomics Reveals the Core and Accessory Genomes of Streptomyces Species

(2015) Ji-Nu Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic engineering of antibiotic factories: new tools for antibiotic production in actinomycetes

(2015) Tilmann Weber et al.   TRENDS IN BIOTECHNOLOGY

Bacterial Sigma Factors: A Historical, Structural, and Genomic Perspective

(2014) Andrey Feklístov et al.   Annual Review of Microbiology

Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

(2014) Ritwika S. Basu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A comparison of key aspects of gene regulation inStreptomyces coelicolorandEscherichia coliusing nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing

(2014) David A. Romero et al.   MOLECULAR MICROBIOLOGY

Ribosome profiling: new views of translation, from single codons to genome scale

(2014) Nicholas T. Ingolia   NATURE REVIEWS GENETICS

Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites

(2013) Kyu-Sang Hwang et al.   BIOTECHNOLOGY ADVANCES

Synthetic riboswitches for the conditional control of gene expression in Streptomyces coelicolor

(2013) M. M. Rudolph et al.   MICROBIOLOGY-SGM

An alternative sigma factor governs the principal sigma factor inStreptomyces griseus

(2013) Hiroshi Otani et al.   MOLECULAR MICROBIOLOGY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

(2013) Teresa Cortes et al.   Cell Reports

Antibiotics produced by Streptomyces

(2012) Rudi Emerson de Lima Procópio et al.   Brazilian Journal of Infectious Diseases

Biosynthesis of clavam metabolites

(2012) Susan E. Jensen   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

(2011) Xiaobin Zheng et al.   BMC GENOMICS

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways

(2010) Marnix H. Medema et al.   Genome Biology and Evolution

Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites

(2010) J. Y. Song et al.   JOURNAL OF BACTERIOLOGY

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus

(2010) B. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis

(2010) Wenqing Chen et al.   Protein & Cell

Two Distinct Major Facilitator Superfamily Drug Efflux Pumps Mediate Chloramphenicol Resistance in Streptomyces coelicolor

(2009) J. J. Vecchione et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The sigma factors of Mycobacterium tuberculosis: regulation of the regulators

(2009) Preeti Sachdeva et al.   FEBS Journal

Genomic basis for natural product biosynthetic diversity in the actinomycetes

(2009) Markus Nett et al.   NATURAL PRODUCT REPORTS

SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics

(2008) Fabrice Touzain et al.   BMC BIOINFORMATICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE