A comparison of key aspects of gene regulation inStreptomyces coelicolorandEscherichia coliusing nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing

Deciphering the Regulon of Streptomyces coelicolor AbrC3, a Positive Response Regulator of Antibiotic Production

(2014) Sergio Rico et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SCO5745, a Bifunctional RNase J Ortholog, Affects Antibiotic Production in Streptomyces coelicolor

(2014) P. Bralley et al.   JOURNAL OF BACTERIOLOGY

Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies

(2014) Dennis Claessen et al.   NATURE REVIEWS MICROBIOLOGY

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

(2014) T. Conway et al.   mBio

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

(2013) Michael J Cipriano et al.   BMC GENOMICS

A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease

(2013) Yu-fei Lin et al.   BMC GENOMICS

Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria

(2013) Matthew J Moody et al.   BMC GENOMICS

Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

(2013) E. Sallet et al.   DNA RESEARCH

Molecular and cytological analysis of the expression ofStreptomycessporulation regulatory genewhiH

(2013) Jessica Persson et al.   FEMS MICROBIOLOGY LETTERS

On the Immortality of Television Sets: "Function" in the Human Genome According to the Evolution-Free Gospel of ENCODE

(2013) D. Graur et al.   Genome Biology and Evolution

The ROK Family Regulator Rok7B7 Pleiotropically Affects Xylose Utilization, Carbon Catabolite Repression, and Antibiotic Production in Streptomyces coelicolor

(2013) M. A. Swiatek et al.   JOURNAL OF BACTERIOLOGY

Multiple Exoribonucleases Catalyze Maturation of the 3′ Terminus of 16S Ribosomal RNA (rRNA)

(2013) Shaheen Sulthana et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular Regulation of Antibiotic Biosynthesis in Streptomyces

(2013) G. Liu et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

DExD/H-box RNA helicases in ribosome biogenesis

(2013) Roman Martin et al.   RNA Biology

Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities

(2013) Ragnhild Weel-Sneve et al.   PLoS Genetics

Bacterial Persistence and Toxin-Antitoxin Loci

(2012) Kenn Gerdes et al.   Annual Review of Microbiology

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

3′-UTRs as a source of regulatory RNAs in bacteria

(2012) Markus Gößringer et al.   EMBO JOURNAL

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs

(2012) I. O. Vvedenskaya et al.   GENES & DEVELOPMENT

Exoribonuclease and Endoribonuclease Activities of RNase BN/RNase Z both Functionin Vivo

(2012) Tanmay Dutta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dynamics of Ribosomal Protein S1 on a Bacterial Ribosome with Cross-Linking and Mass Spectrometry

(2012) Matthew A. Lauber et al.   MOLECULAR & CELLULAR PROTEOMICS

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation

(2012) Asha Ivy Jacob et al.   MOLECULAR CELL

RNase E: at the interface of bacterial RNA processing and decay

(2012) George A. Mackie   NATURE REVIEWS MICROBIOLOGY

Diverse control of metabolism and other cellular processes in Streptomyces coelicolor by the PhoP transcription factor: genome-wide identification of in vivo targets

(2012) Nicholas E. E. Allenby et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization

(2011) Richard A Lewis et al.   BMC GENOMICS

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

(2011) Atsuko Shinhara et al.   BMC GENOMICS

Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli

(2011) Oliver Vesper et al.   CELL

RNase III-Dependent Expression of the rpsO-pnpOperon of Streptomyces coelicolor

(2011) M. L. Gatewood et al.   JOURNAL OF BACTERIOLOGY

Bacterial Transcription Terminators: The RNA 3′-End Chronicles

(2011) Jason M. Peters et al.   JOURNAL OF MOLECULAR BIOLOGY

NanoRNAs: A Class of Small RNAs That Can Prime Transcription Initiation in Bacteria

(2011) Bryce E. Nickels et al.   JOURNAL OF MOLECULAR BIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

NanoRNAs Prime Transcription Initiation In Vivo

(2011) Seth R. Goldman et al.   MOLECULAR CELL

The regulation of the secondary metabolism of Streptomyces: new links and experimental advances

(2011) Gilles P. van Wezel et al.   NATURAL PRODUCT REPORTS

Signal processing in complex chemotaxis pathways

(2011) Steven L. Porter et al.   NATURE REVIEWS MICROBIOLOGY

The UCSC Archaeal Genome Browser: 2012 update

(2011) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing-based identification of small non-coding RNAs inStreptomyces coelicolor

(2011) Michael-Paul Vockenhuber et al.   RNA Biology

Genome-wide inference of regulatory networks in Streptomyces coelicolor

(2010) Marlene Castro-Melchor et al.   BMC GENOMICS

tRNA nucleotidyltransferases: ancient catalysts with an unusual mechanism of polymerization

(2010) Heike Betat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Translation initiation: variations in the mechanism can be anticipated

(2010) Naglis Malys et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Morphogenetic Signaling Molecules of the Streptomycetes

(2010) Joanne M. Willey et al.   CHEMICAL REVIEWS

(p)ppGpp Inhibits Polynucleotide Phosphorylase from Streptomyces but Not from Escherichia coli and Increases the Stability of Bulk mRNA in Streptomyces coelicolor

(2010) M. L. Gatewood et al.   JOURNAL OF BACTERIOLOGY

Mode of Action of RNase BN/RNase Z on tRNA Precursors

(2010) Tanmay Dutta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Three Phosphatidylglycerol-phosphate Phosphatases in the Inner Membrane ofEscherichia coli

(2010) Yi-Hsueh Lu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

FRT-seq: amplification-free, strand-specific transcriptome sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Towards genome-scale signalling-network reconstructions

(2010) Daniel R. Hyduke et al.   NATURE REVIEWS GENETICS

All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

(2010) Joel G. Belasco   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays

(2010) Jennifer G. Mulle et al.   PLoS One

Dynamic evolution of translation initiation mechanisms in prokaryotes

(2010) S. Nakagawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Traffic patrol in the transcription of ribosomal RNA

(2010) Stefan Klumpp et al.   RNA Biology

What is the role of RNase J in mRNA turnover?

(2010) Ciarán Condon   RNA Biology

Synthetic biology of minimal systems

(2009) Petra Schwille et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

A pH-responsive riboregulator

(2009) Gal Nechooshtan et al.   GENES & DEVELOPMENT

Maturation of 23S rRNA in Bacillus subtilis in the Absence of Mini-III

(2009) Y. Redko et al.   JOURNAL OF BACTERIOLOGY

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

An Unexpected Type of Ribosomes Induced by Kasugamycin: A Look into Ancestral Times of Protein Synthesis?

(2009) Anna Chao Kaberdina et al.   MOLECULAR CELL

Rapid cleavage of RNA by RNase E in the absence of 5′ monophosphate stimulation

(2009) Louise Kime et al.   MOLECULAR MICROBIOLOGY

Recent advances in the chemistry, biosynthesis and pharmacology of rapamycin analogs

(2009) Edmund I. Graziani   NATURAL PRODUCT REPORTS

Antitumor compounds from actinomycetes: from gene clusters to new derivatives by combinatorial biosynthesis

(2009) Carlos Olano et al.   NATURAL PRODUCT REPORTS

Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch

(2009) Alexander Serganov et al.   NATURE

The transcription unit architecture of the Escherichia coli genome

(2009) Byung-Kwan Cho et al.   NATURE BIOTECHNOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

(2009) Alfredo Mendoza-Vargas et al.   PLoS One

Escherichia coli MazF Leads to the Simultaneous Selective Synthesis of Both “Death Proteins” and “Survival Proteins”

(2009) Shahar Amitai et al.   PLoS Genetics

Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor: characterization of the HspR regulon

(2009) Giselda Bucca et al.   GENOME BIOLOGY

Biocomputational prediction of small non-coding RNAs in Streptomyces

(2008) Josef Pánek et al.   BMC GENOMICS

Renaissance in antibacterial discovery from actinomycetes

(2008) R BALTZ   CURRENT OPINION IN PHARMACOLOGY

Biosynthetic Engineering of Polyene Macrolides Towards Generation of Improved Antifungal and Antiparasitic Agents

(2008) Patrick Caffrey et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE

Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium

(2008) Klas Flärdh et al.   NATURE REVIEWS MICROBIOLOGY

Small non-coding RNAs in Streptomyces coelicolor

(2008) Julia P. Swiercz et al.   NUCLEIC ACIDS RESEARCH