Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm

Architecture of helix bundle membrane proteins: An analysis of cytochrome c oxidase from bovine mitochondria

(2010) Erik Wallin et al.   PROTEIN SCIENCE

Predicting helix–helix interactions from residue contacts in membrane proteins

(2009) Allan Lo et al.   BIOINFORMATICS

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

(2009) P. W. Hildebrand et al.   NUCLEIC ACIDS RESEARCH

Prediction of membrane protein structures with complex topologies using limited constraints

(2009) P. Barth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coarse-grained simulation: a high-throughput computational approach to membrane proteins

(2008) Mark S.P. Sansom et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

Distinctions between Hydrophobic Helices in Globular Proteins and Transmembrane Segments as Factors in Protein Sorting

(2008) Fiona Cunningham et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CGDB: A database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations

(2008) Alan P. Chetwynd et al.   MOLECULAR MEMBRANE BIOLOGY

Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks

(2008) Angelika Fuchs et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS