A brief primer on genomic epidemiology: lessons learned fromMycobacterium tuberculosis
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Title
A brief primer on genomic epidemiology: lessons learned fromMycobacterium tuberculosis
Authors
Keywords
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Journal
Annals of the New York Academy of Sciences
Volume 1388, Issue 1, Pages 59-77
Publisher
Wiley
Online
2016-12-25
DOI
10.1111/nyas.13273
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Note: Only part of the references are listed.- Genetic Determinants of Drug Resistance inMycobacterium tuberculosisand Their Diagnostic Value
- (2016) Maha R. Farhat et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Reconstructing transmission trees for communicable diseases using densely sampled genetic data
- (2016) Colin J. Worby et al. Annals of Applied Statistics
- Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data
- (2016) C. A. Hardiman et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages
- (2016) Jody E. Phelan et al. BMC GENOMICS
- Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation
- (2016) Brendan R. Jackson et al. CLINICAL INFECTIOUS DISEASES
- The sequence of sequencers: The history of sequencing DNA
- (2016) James M. Heather et al. GENOMICS
- Does Choice Matter? Reference-Based Alignment for Molecular Epidemiology of Tuberculosis
- (2016) Robyn S. Lee et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
- (2016) Marc W. Allard et al. JOURNAL OF CLINICAL MICROBIOLOGY
- XDR-TB transmission in London: Case management and contact tracing investigation assisted by early whole genome sequencing
- (2016) Amber Arnold et al. JOURNAL OF INFECTION
- Clonal expansion of Escherichia coli ST38 carrying a chromosomally integrated OXA-48 carbapenemase gene
- (2016) Jane F. Turton et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing
- (2016) Matthew Thoendel et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Antimicrobial Resistance in Mycobacterium tuberculosis : The Odd One Out
- (2016) Vegard Eldholm et al. TRENDS IN MICROBIOLOGY
- Whole genome sequencing of Mycobacterium tuberculosis for detection of recent transmission and tracing outbreaks: A systematic review
- (2016) Vlad Nikolayevskyy et al. TUBERCULOSIS
- Genomic Epidemiology: Whole-Genome-Sequencing–Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens
- (2016) Xiangyu Deng et al. Annual Review of Food Science and Technology
- Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe
- (2016) David M. Aanensen et al. mBio
- Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
- (2016) Louise J Pankhurst et al. Lancet Respiratory Medicine
- Identification ofSalmonellafor public health surveillance using whole genome sequencing
- (2016) Philip M. Ashton et al. PeerJ
- Recent and emerging innovations inSalmonelladetection: a food and environmental perspective
- (2016) Rebecca L. Bell et al. Microbial Biotechnology
- Library construction for next-generation sequencing: Overviews and challenges
- (2016) Steven R. Head et al. BIOTECHNIQUES
- Pitfalls of DNA Quantification Using DNA-Binding Fluorescent Dyes and Suggested Solutions
- (2016) Yuki Nakayama et al. PLoS One
- Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing
- (2016) Alexander C. Outhred et al. PLoS One
- Whole-Genome Sequencing in Outbreak Analysis
- (2015) Carol A. Gilchrist et al. CLINICAL MICROBIOLOGY REVIEWS
- The application of genomics to tracing bacterial pathogen transmission
- (2015) Nicholas J Croucher et al. CURRENT OPINION IN MICROBIOLOGY
- A clonal outbreak of tuberculosis in a homeless population in the interior of British Columbia, Canada, 2008–2015
- (2015) J. M. CHENG et al. EPIDEMIOLOGY AND INFECTION
- A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: ‘near real-time’ application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014
- (2015) T Inns et al. Eurosurveillance
- Insights from 20 years of bacterial genome sequencing
- (2015) Miriam Land et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland
- (2015) Sandra Reuter et al. GENOME RESEARCH
- Review of alignment and SNP calling algorithms for next-generation sequencing data
- (2015) M. Mielczarek et al. JOURNAL OF APPLIED GENETICS
- Clinical Application of Whole-Genome Sequencing To Inform Treatment for Multidrug-Resistant Tuberculosis Cases
- (2015) Adam A. Witney et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Laboratory-Acquired Infection with Salmonella enterica Serovar Typhimurium Exposed by Whole-Genome Sequencing
- (2015) David C. Alexander et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations
- (2015) S. Bekal et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples
- (2015) Amanda C. Brown et al. JOURNAL OF CLINICAL MICROBIOLOGY
- PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data
- (2015) Silke Feuerriegel et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole-genome sequencing improves discrimination of relapse from reinfection and identifies transmission events among patients with recurrent Clostridium difficile infections
- (2015) M. Mac Aogáin et al. JOURNAL OF HOSPITAL INFECTION
- Whole-genome sequencing in hierarchy with pulsed-field gel electrophoresis: the utility of this approach to establish possible sources of MRSA cross-transmission
- (2015) G. Moore et al. JOURNAL OF HOSPITAL INFECTION
- Genomic Epidemiology of Multidrug-ResistantMycobacterium tuberculosisDuring Transcontinental Spread
- (2015) Mireia Coscolla et al. JOURNAL OF INFECTIOUS DISEASES
- Whole-Genome Sequencing of Measles Virus Genotypes H1 and D8 During Outbreaks of Infection Following the 2010 Olympic Winter Games Reveals Viral Transmission Routes
- (2015) Jennifer L. Gardy et al. JOURNAL OF INFECTIOUS DISEASES
- Reemergence and Amplification of Tuberculosis in the Canadian Arctic
- (2015) Robyn S. Lee et al. JOURNAL OF INFECTIOUS DISEASES
- Tracing Origins of theSalmonellaBareilly Strain Causing a Food-borne Outbreak in the United States
- (2015) Maria Hoffmann et al. JOURNAL OF INFECTIOUS DISEASES
- Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
- (2015) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Whole genome sequence analysis of multidrug-resistant Mycobacterium tuberculosis Beijing isolates from an outbreak in Thailand
- (2015) Sanjib Mani Regmi et al. MOLECULAR GENETICS AND GENOMICS
- Twenty years of bacterial genome sequencing
- (2015) Nicholas J. Loman et al. NATURE REVIEWS MICROBIOLOGY
- Molecular Evidence of Sexual Transmission of Ebola Virus
- (2015) Suzanne E. Mate et al. NEW ENGLAND JOURNAL OF MEDICINE
- A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits
- (2015) Timokratis Karamitros et al. NUCLEIC ACIDS RESEARCH
- 'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens
- (2015) Colin J. Worby et al. PLoS One
- Population genomics ofMycobacterium tuberculosisin the Inuit
- (2015) Robyn S. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic perspectives on the evolution and spread of bacterial pathogens
- (2015) Stephen D. Bentley et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- Completing bacterial genome assemblies: strategy and performance comparisons
- (2015) Yu-Chieh Liao et al. Scientific Reports
- The role of pathogen genomics in assessing disease transmission
- (2015) V. Sintchenko et al. BMJ-British Medical Journal
- Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
- (2015) Francesc Coll et al. Genome Medicine
- Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set
- (2015) Matthew Hall et al. PLoS Computational Biology
- The role of pathogen genomics in assessing disease transmission
- (2015) V. Sintchenko et al. BMJ-British Medical Journal
- Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
- (2015) JA Guerra-Assunção et al. eLife
- Best practices for evaluating single nucleotide variant calling methods for microbial genomics
- (2015) Nathan D. Olson et al. Frontiers in Genetics
- A Collaborative Approach for “ReSeq-ing” Mycobacterium tuberculosis Drug Resistance: Convergence for Drug and Diagnostic Developers
- (2015) Marco Schito et al. EBioMedicine
- QuorUM: An Error Corrector for Illumina Reads
- (2015) Guillaume Marçais et al. PLoS One
- Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi
- (2015) Judith R. Glynn et al. PLoS One
- Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data
- (2015) Will Rowe et al. PLoS One
- TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing
- (2015) Tsuyoshi Sekizuka et al. PLoS One
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Blue: correcting sequencing errors using consensus and context
- (2014) Paul Greenfield et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
- (2014) Andreas Steiner et al. BMC GENOMICS
- Library preparation methods for next-generation sequencing: Tone down the bias
- (2014) Erwin L. van Dijk et al. EXPERIMENTAL CELL RESEARCH
- Whole-Genome Sequencing of the Mycobacterium tuberculosis Manila Sublineage Results in Less Clustering and Better Resolution than Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat (MIRU-VNTR) Typing and Spoligotyping
- (2014) F. B. Jamieson et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Use of Mycobacteriophage Quantitative PCR on MGIT Broths for a Rapid Tuberculosis Antibiogram
- (2014) S. Foongladda et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Isolation and Enrichment of Cryptosporidium DNA and Verification of DNA Purity for Whole-Genome Sequencing
- (2014) Yaqiong Guo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole-Genome-Based Mycobacterium tuberculosis Surveillance: a Standardized, Portable, and Expandable Approach
- (2014) T. A. Kohl et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Concordance between Molecular and Phenotypic Testing of Mycobacterium tuberculosis Complex Isolates for Resistance to Rifampin and Isoniazid in the United States
- (2014) M. A. Yakrus et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Tracking a Tuberculosis Outbreak Over 21 Years: Strain-Specific Single-Nucleotide Polymorphism Typing Combined With Targeted Whole-Genome Sequencing
- (2014) David Stucki et al. JOURNAL OF INFECTIOUS DISEASES
- Recurrence due to Relapse or Reinfection WithMycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-up
- (2014) José Afonso Guerra-Assunção et al. JOURNAL OF INFECTIOUS DISEASES
- Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study
- (2014) Yonatan H Grad et al. LANCET INFECTIOUS DISEASES
- Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data
- (2014) Xavier Didelot et al. MOLECULAR BIOLOGY AND EVOLUTION
- Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections
- (2014) M. J. PALLEN PARASITOLOGY
- Resistance Determinants and Mobile Genetic Elements of an NDM-1-Encoding Klebsiella pneumoniae Strain
- (2014) Corey M. Hudson et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Marked Microevolution of a Unique Mycobacterium tuberculosis Strain in 17 Years of Ongoing Transmission in a High Risk Population
- (2014) Carolina Mehaffy et al. PLoS One
- Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
- (2014) S. K. Gire et al. SCIENCE
- Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae
- (2014) S. Conlan et al. Science Translational Medicine
- Consequences of genomic diversity in Mycobacterium tuberculosis
- (2014) Mireia Coscolla et al. SEMINARS IN IMMUNOLOGY
- Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis
- (2014) Tao Luo et al. TUBERCULOSIS
- Bacterial Phylogenetic Reconstruction from Whole Genomes Is Robust to Recombination but Demographic Inference Is Not
- (2014) Jessica Hedge et al. mBio
- Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic
- (2014) Mark Eppinger et al. mBio
- OutbreakTools: A new platform for disease outbreak analysis using the R software
- (2014) Thibaut Jombart et al. Epidemics
- Seeking the source ofPseudomonas aeruginosainfections in a recently opened hospital: an observational study using whole-genome sequencing
- (2014) Joshua Quick et al. BMJ Open
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumanniiin Birmingham, England
- (2014) Mihail R Halachev et al. Genome Medicine
- Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data
- (2014) Colin J. Worby et al. PLoS Computational Biology
- Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences: an observational study
- (2014) Timothy M Walker et al. Lancet Respiratory Medicine
- Culture-independent detection and characterisation ofMycobacterium tuberculosisandM. africanumin sputum samples using shotgun metagenomics on a benchtop sequencer
- (2014) Emma L. Doughty et al. PeerJ
- A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
- (2014) Joshua Quick et al. GigaScience
- Fragmentation of DNA affects the accuracy of the DNA quantitation by the commonly used methods
- (2013) Tatiana Sedlackova et al. BIOLOGICAL PROCEDURES ONLINE
- Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data
- (2013) Josephine M Bryant et al. BMC INFECTIOUS DISEASES
- A survey of tools for variant analysis of next-generation genome sequencing data
- (2013) S. Pabinger et al. BRIEFINGS IN BIOINFORMATICS
- Sequences of multiple bacterial genomes and a Chlamydia trachomatis genotype from direct sequencing of DNA derived from a vaginal swab diagnostic specimen
- (2013) P. Andersson et al. CLINICAL MICROBIOLOGY AND INFECTION
- A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
- (2013) Nicholas J. Loman et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis
- (2013) M. McGrath et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in Mycobacterium tuberculosis
- (2013) H. Nebenzahl-Guimaraes et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Discordance across Several Methods for Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates in a Single Laboratory
- (2013) S. Banu et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission
- (2013) Laura Pérez-Lago et al. JOURNAL OF INFECTIOUS DISEASES
- Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study
- (2013) Josephine M Bryant et al. LANCET
- Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis
- (2013) Maha R Farhat et al. NATURE GENETICS
- Modern clinical microbiology: new challenges and solutions
- (2013) Pierre-Edouard Fournier et al. NATURE REVIEWS MICROBIOLOGY
- Bacterial genomes in epidemiology--present and future
- (2013) N. J. Croucher et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
- (2013) Midori Kato-Maeda et al. PLoS One
- Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing
- (2013) Taane G. Clark et al. PLoS One
- Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
- (2013) Andreas Roetzer et al. PLOS MEDICINE
- The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations
- (2013) Caitlin S. Pepperell et al. PLoS Pathogens
- Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study
- (2013) Josephine M Bryant et al. Lancet Respiratory Medicine
- Drug Susceptibility Testing for Optimizing Tuberculosis Treatment
- (2012) Sami O. Simons et al. CURRENT PHARMACEUTICAL DESIGN
- Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences
- (2012) Josephine Bryant et al. Future Microbiology
- Gene Sequencing for Routine Verification of Pyrazinamide Resistance in Mycobacterium tuberculosis: a Role for pncA but Not rpsA
- (2012) D. C. Alexander et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Rapid Whole-Genome Sequencing for Investigation of a Suspected Tuberculosis Outbreak
- (2012) M. E. Torok et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
- (2012) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
- (2012) Tanya Golubchik et al. NATURE GENETICS
- Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
- (2012) Kathryn E Holt et al. NATURE GENETICS
- Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak
- (2012) Claudio U. Köser et al. NEW ENGLAND JOURNAL OF MEDICINE
- Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
- (2012) E. S. Snitkin et al. Science Translational Medicine
- Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database
- (2012) David Stucki et al. TUBERCULOSIS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Genotyping ofMycobacterium tuberculosis: application in epidemiologic studies
- (2011) Midori Kato-Maeda et al. Future Microbiology
- Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
- (2011) N. J. Parkinson et al. GENOME RESEARCH
- Recommendations on modern contact investigation methods for enhancing tuberculosis control [Review article]
- (2011) V. J. Cook et al. INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE
- Science in court: the myth of HIV fingerprinting
- (2011) Ana B Abecasis et al. LANCET INFECTIOUS DISEASES
- Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
- (2011) Jennifer L. Gardy et al. NEW ENGLAND JOURNAL OF MEDICINE
- Bacterial epidemiology and biology - lessons from genome sequencing
- (2011) Julian Parkhill et al. GENOME BIOLOGY
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- High-Resolution Typing by Integration of Genome Sequencing Data in a Large Tuberculosis Cluster
- (2010) A. C. Schurch et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Origins and Evolution of Antibiotic Resistance
- (2010) J. Davies et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis
- (2009) Frédéric Veyrier et al. BMC EVOLUTIONARY BIOLOGY
- The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale
- (2009) Anita C. Schürch et al. INFECTION GENETICS AND EVOLUTION
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Epigenetic inheritance based evolution of antibiotic resistance in bacteria
- (2008) Mike Adam et al. BMC EVOLUTIONARY BIOLOGY
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