Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection

(2011) M. Touchon et al.   JOURNAL OF BACTERIOLOGY

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

A Multi-Center Randomized Trial to Assess the Efficacy of Gatifloxacin versus Ciprofloxacin for the Treatment of Shigellosis in Vietnamese Children

(2011) Ha Vinh et al.   PLoS Neglected Tropical Diseases

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

(2010) Giovanna Morelli et al.   NATURE GENETICS

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation

(2009) Ha Vinh et al.   BMC INFECTIOUS DISEASES

Outbreaks of Shigella sonnei infections in Denmark and Australia linked to consumption of imported raw baby corn

(2009) H. C. LEWIS et al.   EPIDEMIOLOGY AND INFECTION

Inactivated and subunit vaccines to prevent shigellosis

(2009) Robert W Kaminski et al.   Expert Review of Vaccines

Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach

(2009) Jing Tang et al.   PLoS Computational Biology

Acanthamoeba castellanii an environmental host for Shigella dysenteriae and Shigella sonnei

(2008) Amir Saeed et al.   ARCHIVES OF MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty

(2007) Joe Parker et al.   INFECTION GENETICS AND EVOLUTION