Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections

Molecular diagnostics and personalised medicine in wound care: assessment of outcomes

(2014) S.E. Dowd et al.   Journal of Wound Care

Sequences of multiple bacterial genomes and a Chlamydia trachomatis genotype from direct sequencing of DNA derived from a vaginal swab diagnostic specimen

(2013) P. Andersson et al.   CLINICAL MICROBIOLOGY AND INFECTION

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

(2013) H. M. B. Seth-Smith et al.   GENOME RESEARCH

A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4

(2013) Nicholas J. Loman et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

First insights into the metagenome of Egyptian mummies using next-generation sequencing

(2013) Rabab Khairat et al.   JOURNAL OF APPLIED GENETICS

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

(2013) H. Hasman et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Population genetics analysis during the elimination process of Plasmodium falciparum in Djibouti

(2013) Bouh Abdi Khaireh et al.   MALARIA JOURNAL

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Metagenomic Analysis of Tuberculosis in a Mummy

(2013) Jacqueline Z.-M. Chan et al.   NEW ENGLAND JOURNAL OF MEDICINE

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

(2013) J. S. McLean et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

(2013) V. J. Schuenemann et al.   SCIENCE

The human virome: new tools and concepts

(2013) Marc Lecuit et al.   TRENDS IN MICROBIOLOGY

Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England

(2013) T H Wong et al.   Virology Journal

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Next-generation sequencing technology in clinical virology

(2012) M.R. Capobianchi et al.   CLINICAL MICROBIOLOGY AND INFECTION

Metagenomics: microbial diversity through a scratched lens

(2012) Ben Temperton et al.   CURRENT OPINION IN MICROBIOLOGY

Recent advances in nanopore sequencing

(2012) Raj D. Maitra et al.   ELECTROPHORESIS

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

(2012) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

Genotype of a historic strain of Mycobacterium tuberculosis

(2012) A. S. Bouwman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing

(2012) Andreas Keller et al.   Nature Communications

Unbiased Parallel Detection of Viral Pathogens in Clinical Samples by Use of a Metagenomic Approach

(2011) J. Yang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A draft genome of Yersinia pestis from victims of the Black Death

(2011) Kirsten I. Bos et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

From orphan virus to pathogen: the path to the clinical lab

(2011) Linlin Li et al.   Current Opinion in Virology

Gut microbiome-host interactions in health and disease

(2011) James M Kinross et al.   Genome Medicine

Lung infections in cystic fibrosis: deriving clinical insight from microbial complexity

(2010) Geraint B Rogers et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis

(2009) J. G. Victoria et al.   JOURNAL OF VIROLOGY

A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases

(2008) Gustavo Palacios et al.   NEW ENGLAND JOURNAL OF MEDICINE