Recurrence due to Relapse or Reinfection WithMycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-up

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The Temporal Dynamics of Relapse and Reinfection Tuberculosis After Successful Treatment: A Retrospective Cohort Study

(2014) F. M. Marx et al.   CLINICAL INFECTIOUS DISEASES

Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data

(2013) Josephine M Bryant et al.   BMC INFECTIOUS DISEASES

Relapse more common than reinfection in recurrent tuberculosis 1–2 years post treatment in urban Uganda

(2013) H. Luzze et al.   INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE

Tuberculosis Relapse in Vietnam Is Significantly Associated With Mycobacterium tuberculosis Beijing Genotype Infections

(2013) Mai N. T. Huyen et al.   JOURNAL OF INFECTIOUS DISEASES

Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission

(2013) Laura Pérez-Lago et al.   JOURNAL OF INFECTIOUS DISEASES

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

(2013) Maha R Farhat et al.   NATURE GENETICS

Control of (Multi)Drug Resistance and Tuberculosis Incidence over 23 Years in the Context of a Well-Supported Tuberculosis Programme in Rural Malawi

(2013) Sebastian M. Mboma et al.   PLoS One

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

(2013) Josephine M Bryant et al.   Lancet Respiratory Medicine

The impact of HIV and ART on recurrent tuberculosis in a sub-Saharan setting

(2012) Rein M.G.J. Houben et al.   AIDS

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

(2012) Francesc Coll et al.   BIOINFORMATICS

SITVITWEB – A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

(2012) Christophe Demay et al.   INFECTION GENETICS AND EVOLUTION

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

(2012) Timothy M Walker et al.   LANCET INFECTIOUS DISEASES

How host heterogeneity governs tuberculosis reinfection?

(2012) M. G. M. Gomes et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recurrent TB: relapse or reinfection? The effect of HIV in a general population cohort in Malawi

(2010) Amelia C Crampin et al.   AIDS

Molecular Detection of Mixed Infections ofMycobacterium tuberculosisStrains in Sputum Samples from Patients in Karonga District, Malawi

(2010) Kim Mallard et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Recurrent Tuberculosis: Relapse, Reinfection, and HIV

(2010) Richard E. Chaisson et al.   JOURNAL OF INFECTIOUS DISEASES

Impact of HIV Infection on the Recurrence of Tuberculosis in South India

(2010) Sujatha Narayanan et al.   JOURNAL OF INFECTIOUS DISEASES

Changes in Mycobacterium tuberculosis Genotype Families Over 20 Years in a Population-Based Study in Northern Malawi

(2010) Judith R. Glynn et al.   PLoS One

Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

(2009) Iñaki Comas et al.   PLoS One