Studying fungal pathogens of humans and fungal infections: fungal diversity and diversity of approaches

Broad antifungal resistance mediated by RNAi-dependent epimutation in the basal human fungal pathogen Mucor circinelloides

(2019) Zanetta Chang et al.   PLoS Genetics

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

(2019) Mathias L. Richard et al.   Nature Reviews Gastroenterology & Hepatology

Dynamic ploidy changes drive fluconazole resistance in human cryptococcal meningitis

(2019) Neil R.H. Stone et al.   JOURNAL OF CLINICAL INVESTIGATION

Human Anti-fungal Th17 Immunity and Pathology Rely on Cross-Reactivity against Candida albicans

(2019) Petra Bacher et al.   CELL

Oleaginous yeast for biofuel and oleochemical production

(2019) Michael Spagnuolo et al.   CURRENT OPINION IN BIOTECHNOLOGY

Early-onset invasive aspergillosis and other fungal infections in patients treated with ibrutinib

(2018) David Ghez et al.   BLOOD

Modulation of Myelopoiesis Progenitors Is an Integral Component of Trained Immunity

(2018) Ioannis Mitroulis et al.   CELL

Metabolic Induction of Trained Immunity through the Mevalonate Pathway

(2018) Siroon Bekkering et al.   CELL

Worldwide emergence of resistance to antifungal drugs challenges human health and food security

(2018) Matthew C. Fisher et al.   SCIENCE

Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing

(2018) Dea Garcia-Hermoso et al.   mBio

Gene flow contributes to diversification of the major fungal pathogen Candida albicans

(2018) Jeanne Ropars et al.   Nature Communications

Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae

(2018) Jialan Yuan et al.   Scientific Reports

The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesis

(2018) Ivy M. Dambuza et al.   PLoS Pathogens

Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators

(2018) Benjamin Hommel et al.   PLoS Pathogens

Cryptococcus neoformans can form titan-like cells in vitro in response to multiple signals

(2018) Nuria Trevijano-Contador et al.   PLoS Pathogens

Candida-Reactive T Cells for the Diagnosis of Invasive Candida Infection—A Prospective Pilot Study

(2018) Felix C. Koehler et al.   Frontiers in Microbiology

The draft genome sequence of forest musk deer (Moschus berezovskii)

(2018) Zhenxin Fan et al.   GigaScience

Inherited CARD9 Deficiency: Invasive Disease Caused by Ascomycete Fungi in Previously Healthy Children and Adults

(2018) Emilie Corvilain et al.   JOURNAL OF CLINICAL IMMUNOLOGY

Burden of HIV-associated histoplasmosis compared with tuberculosis in Latin America: a modelling study

(2018) Antoine A Adenis et al.   LANCET INFECTIOUS DISEASES

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

(2018) Malte Thodberg et al.   NUCLEIC ACIDS RESEARCH

Experimental evolution of a fungal pathogen into a gut symbiont

(2018) Gloria Hoi Wan Tso et al.   SCIENCE

Fusarium Wilt of Banana: Current Knowledge on Epidemiology and Research Needs Toward Sustainable Disease Management

(2018) Miguel Dita et al.   Frontiers in Plant Science

Review of the Amphibian Immune Response to Chytridiomycosis, and Future Directions

(2018) Laura F. Grogan et al.   Frontiers in Immunology

Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans

(2017) Christopher A. Desjardins et al.   GENOME RESEARCH

Fungal infections in HIV/AIDS

(2017) Andrew H Limper et al.   LANCET INFECTIOUS DISEASES

The two-component response regulator Skn7 belongs to a network of transcription factors regulating morphogenesis in Candida albicans and independently limits morphogenesis-induced ROS accumulation

(2017) Virginia Basso et al.   MOLECULAR MICROBIOLOGY

A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction inNeurospora crassa

(2017) Huiquan Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome

(2017) Kevin P. Drees et al.   mBio

Identification of small RNAs in extracellular vesicles from the commensal yeast Malassezia sympodialis

(2017) Simon Rayner et al.   Scientific Reports

Antifungal Therapy: New Advances in the Understanding and Treatment of Mycosis

(2017) Liliana Scorzoni et al.   Frontiers in Microbiology

Immunological Consequences of Intestinal Fungal Dysbiosis

(2016) Matthew L. Wheeler et al.   Cell Host & Microbe

Glutaminolysis and Fumarate Accumulation Integrate Immunometabolic and Epigenetic Programs in Trained Immunity

(2016) Rob J.W. Arts et al.   Cell Metabolism

In VitroExperimental Model of Trained Innate Immunity in Human Primary Monocytes

(2016) Siroon Bekkering et al.   Clinical and Vaccine Immunology

New clinical phenotypes of fungal infections in special hosts

(2016) B. Pilmis et al.   CLINICAL MICROBIOLOGY AND INFECTION

Global access to antifungal therapy and its variable cost

(2016) Matthew Kneale et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Candidalysin is a fungal peptide toxin critical for mucosal infection

(2016) David L. Moyes et al.   NATURE

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Immune memory in invertebrates

(2016) Barbara Milutinović et al.   SEMINARS IN IMMUNOLOGY

Innate immune memory in mammals

(2016) Melanie A. Hamon et al.   SEMINARS IN IMMUNOLOGY

Volatile Compounds Emitted by Pseudomonas aeruginosa Stimulate Growth of the Fungal Pathogen Aspergillus fumigatus

(2016) Benoit Briard et al.   mBio

Morphotype-specific effector functions of Cryptococcus neoformans PUM1

(2016) Jan Naseer Kaur et al.   Scientific Reports

Candida species Rewired Hyphae Developmental Programs for Chlamydospore Formation

(2016) Bettina Böttcher et al.   Frontiers in Microbiology

Candida albicans Agglutinin-Like Sequence (Als) Family Vignettes: A Review of Als Protein Structure and Function

(2016) Lois L. Hoyer et al.   Frontiers in Microbiology

Interspecies Interactions between Clostridium difficile and Candida albicans

(2016) Pim T. van Leeuwen et al.   mSphere

Economic and Environmental Impact of Rice Blast Pathogen (Magnaporthe oryzae) Alleviation in the United States

(2016) Lawton Nalley et al.   PLoS One

Intron retention-dependent gene regulation in Cryptococcus neoformans

(2016) Sara Gonzalez-Hilarion et al.   Scientific Reports

PTX3Polymorphisms and Invasive Mold Infections After Solid Organ Transplant: Figure 1.

(2015) Agnieszka Wójtowicz et al.   CLINICAL INFECTIOUS DISEASES

RNAN6-methyladenosine methylation in post-transcriptional gene expression regulation

(2015) Yanan Yue et al.   GENES & DEVELOPMENT

Fungal Signature in the Gut Microbiota of Pediatric Patients With Inflammatory Bowel Disease

(2015) Christel Chehoud et al.   INFLAMMATORY BOWEL DISEASES

An expanded regulatory network temporally controlsCandida albicansbiofilm formation

(2015) Emily P. Fox et al.   MOLECULAR MICROBIOLOGY

The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory

(2015) Keisuke Yoshida et al.   NATURE IMMUNOLOGY

Pseudomonas aeruginosa manipulates redox and iron homeostasis of its microbiota partner Aspergillus fumigatus via phenazines

(2015) Benoit Briard et al.   Scientific Reports

The lncRNA RZE1 Controls Cryptococcal Morphological Transition

(2015) Nadia Chacko et al.   PLoS Genetics

Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation

(2015) Sang Hu Kim et al.   PLoS Pathogens

Fungi Identify the Geographic Origin of Dust Samples

(2015) Neal S. Grantham et al.   PLoS One

Genetic and phenotypic intra-species variation inCandida albicans

(2014) Matthew P. Hirakawa et al.   GENOME RESEARCH

Antifungal drug resistance evoked via RNAi-dependent epimutations

(2014) Silvia Calo et al.   NATURE

The cryptic sexual strategies of human fungal pathogens

(2014) Iuliana V. Ene et al.   NATURE REVIEWS MICROBIOLOGY

Genetic PTX3 Deficiency and Aspergillosis in Stem-Cell Transplantation

(2014) Cristina Cunha et al.   NEW ENGLAND JOURNAL OF MEDICINE

mTOR- and HIF-1 -mediated aerobic glycolysis as metabolic basis for trained immunity

(2014) S.-C. Cheng et al.   SCIENCE

Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity

(2014) S. Saeed et al.   SCIENCE

Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibodies Are a Risk Factor for Central Nervous System Infection by Cryptococcus gattii in Otherwise Immunocompetent Patients

(2014) T. Saijo et al.   mBio

Multicenter Outbreak of Infections by Saprochaete clavata , an Unrecognized Opportunistic Fungal Pathogen

(2014) Sophie Vaux et al.   mBio

Cryptococcus neoformans and Cryptococcus gattii, the Etiologic Agents of Cryptococcosis

(2014) K. J. Kwon-Chung et al.   Cold Spring Harbor Perspectives in Medicine

Rapid Mechanisms for Generating Genome Diversity: Whole Ploidy Shifts, Aneuploidy, and Loss of Heterozygosity

(2014) R. J. Bennett et al.   Cold Spring Harbor Perspectives in Medicine

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

(2014) Guilhem Janbon et al.   PLoS Genetics

Systematic Phenotyping of a Large-Scale Candida glabrata Deletion Collection Reveals Novel Antifungal Tolerance Genes

(2014) Tobias Schwarzmüller et al.   PLoS Pathogens

Titan cells in Cryptococcus neoformans: cells with a giant impact

(2013) Oscar Zaragoza et al.   CURRENT OPINION IN MICROBIOLOGY

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

Deep Dermatophytosis and Inherited CARD9 Deficiency

(2013) Fanny Lanternier et al.   NEW ENGLAND JOURNAL OF MEDICINE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Ploidy variation as an adaptive mechanism in human pathogenic fungi

(2013) Carl A. Morrow et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Deep Resequencing of GWAS Loci Identifies Rare Variants in CARD9, IL23R and RNF186 That Are Associated with Ulcerative Colitis

(2013) Mélissa Beaudoin et al.   PLoS Genetics

The Uve1 Endonuclease Is Regulated by the White Collar Complex to Protect Cryptococcus neoformans from UV Damage

(2013) Surbhi Verma et al.   PLoS Genetics

A Comprehensive Functional Portrait of Two Heat Shock Factor-Type Transcriptional Regulators Involved in Candida albicans Morphogenesis and Virulence

(2013) Sadri Znaidi et al.   PLoS Pathogens

A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans

(2012) Clarissa J. Nobile et al.   CELL

Candida albicans Infection Affords Protection against Reinfection via Functional Reprogramming of Monocytes

(2012) Jessica Quintin et al.   Cell Host & Microbe

The Cryptococcus neoformans Capsule: a Sword and a Shield

(2012) T. R. O'Meara et al.   CLINICAL MICROBIOLOGY REVIEWS

Invasive fungal infections in patients with cancer in the Intensive Care Unit

(2012) Nikolaos V. Sipsas et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Adult-Onset Immunodeficiency in Thailand and Taiwan

(2012) Sarah K. Browne et al.   NEW ENGLAND JOURNAL OF MEDICINE

A Versatile Overexpression Strategy in the Pathogenic Yeast Candida albicans: Identification of Regulators of Morphogenesis and Fitness

(2012) Murielle Chauvel et al.   PLoS One

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

A Major Role for Capsule-Independent Phagocytosis-Inhibitory Mechanisms in Mammalian Infection by Cryptococcus neoformans

(2011) Cheryl D. Chun et al.   Cell Host & Microbe

Trained Immunity: A Memory for Innate Host Defense

(2011) Mihai G. Netea et al.   Cell Host & Microbe

Regulatory Circuitry Governing Fungal Development, Drug Resistance, and Disease

(2011) R. S. Shapiro et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease

(2011) Manuel A Rivas et al.   NATURE GENETICS

Growth of Candida albicans hyphae

(2011) Peter E. Sudbery   NATURE REVIEWS MICROBIOLOGY

Candida albicans morphogenesis and host defence: discriminating invasion from colonization

(2011) Neil A. R. Gow et al.   NATURE REVIEWS MICROBIOLOGY

Hyphal growth in Candida albicans requires the phosphorylation of Sec2 by the Cdc28-Ccn1/Hgc1 kinase

(2010) Amy Bishop et al.   EMBO JOURNAL

Characterizing the role of RNA silencing components in Cryptococcus neoformans

(2010) Guilhem Janbon et al.   FUNGAL GENETICS AND BIOLOGY

Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity

(2010) Suzanne M Noble et al.   NATURE GENETICS

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays

(2010) Adnane Sellam et al.   GENOME BIOLOGY

How Sweet it is! Cell Wall Biogenesis and Polysaccharide Capsule Formation inCryptococcus neoformans

(2009) Tamara Lea Doering   Annual Review of Microbiology

Candida albicansinternalization by host cells is mediated by a clathrin-dependent mechanism

(2009) Emilia Moreno-Ruiz et al.   CELLULAR MICROBIOLOGY

Molecular phylogenetics and epidemiology ofCandida albicans

(2009) Frank C Odds   Future Microbiology

Beta-glucans in higher fungi and their health effects

(2009) Otakar Rop et al.   NUTRITION REVIEWS

Genetic Association Analysis of the Functional c.714T>G Polymorphism and Mucosal Expression of Dectin-1 in Inflammatory Bowel Disease

(2009) Hilbert S. de Vries et al.   PLoS One

Systematic Genetic Analysis of Virulence in the Human Fungal Pathogen Cryptococcus neoformans

(2008) Oliver W. Liu et al.   CELL

Complementary Adhesin Function in C. albicans Biofilm Formation

(2008) Clarissa J. Nobile et al.   CURRENT BIOLOGY

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

(2008) Christoph Jöchl et al.   NUCLEIC ACIDS RESEARCH