A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction inNeurospora crassa

RNA Editing During Sexual Development Occurs in Distantly Related Filamentous Ascomycetes

(2017) Ines Teichert et al.   Genome Biology and Evolution

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing

(2017) Rui Zhang et al.   PLoS Genetics

Adaptation of A-to-I RNA editing in Drosophila

(2017) Yuange Duan et al.   PLoS Genetics

Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes

(2016) Huiquan Liu et al.   GENOME RESEARCH

A-to-I RNA editing independent of ADARs in filamentous fungi

(2016) Chenfang Wang et al.   RNA Biology

The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection

(2016) Yao Yu et al.   PLoS Genetics

The origin of the ADAR gene family and animal RNA editing

(2015) Laura F Grice et al.   BMC EVOLUTIONARY BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

A-to-I editing of coding and non-coding RNAs by ADARs

(2015) Kazuko Nishikura   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Profiling RNA editing in human tissues: towards the inosinome Atlas

(2015) Ernesto Picardi et al.   Scientific Reports

Elevated Mutation Rate during Meiosis in Saccharomyces cerevisiae

(2015) Alison Rattray et al.   PLoS Genetics

Recurrent turnover of senescent cells during regeneration of a complex structure

(2015) Maximina H Yun et al.   eLife

Human coding RNA editing is generally nonadaptive

(2014) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa

(2014) C. Wu et al.   G3-Genes Genomes Genetics

REDItools: high-throughput RNA editing detection made easy

(2013) Ernesto Picardi et al.   BIOINFORMATICS

Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa

(2013) Zheng Wang et al.   EUKARYOTIC CELL

Early Colony Establishment in Neurospora crassa Requires a MAP Kinase Regulatory Network

(2013) Abigail C. Leeder et al.   GENETICS

A comparative systems analysis of polysaccharide-elicited responses inNeurospora crassareveals carbon source-specific cellular adaptations

(2013) J. Philipp Benz et al.   MOLECULAR MICROBIOLOGY

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila

(2013) Georges St Laurent et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Neurospora crassa, a Model System for Epigenetics Research

(2013) R. Aramayo et al.   Cold Spring Harbor Perspectives in Biology

Global Analysis of Serine/Threonine and Tyrosine Protein Phosphatase Catalytic Subunit Genes in Neurospora crassa Reveals Interplay Between Phosphatases and the p38 Mitogen-Activated Protein Kinase

(2013) Arit Ghosh et al.   G3-Genes Genomes Genetics

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

Roles for Receptors, Pheromones, G Proteins, and Mating Type Genes During Sexual Reproduction in Neurospora crassa

(2012) H. Kim et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A Role for A-to-I RNA Editing in Temperature Adaptation

(2012) Sandra C. Garrett et al.   PHYSIOLOGY

Molecular dissection ofNeurosporaSpore killer meiotic drive elements

(2012) Thomas M. Hammond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

(2012) E. A. Znameroski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA Editing Underlies Temperature Adaptation in K+ Channels from Polar Octopuses

(2012) S. Garrett et al.   SCIENCE

Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila

(2012) Yiannis A. Savva et al.   Nature Communications

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

Global Analysis of Serine-Threonine Protein Kinase Genes in Neurospora crassa

(2011) Gyungsoon Park et al.   EUKARYOTIC CELL

Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous FungusNeurospora tetrasperma

(2011) Christopher E. Ellison et al.   GENETICS

Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa

(2011) Kevin McCluskey et al.   G3-Genes Genomes Genetics

Functions and Regulation of RNA Editing by ADAR Deaminases

(2010) Kazuko Nishikura   Annual Review of Biochemistry

Proteome diversification by adenosine to inosine RNA-editing

(2010) Dieter Pullirsch et al.   RNA Biology

DNA Methylation and Normal Chromosome Behavior in Neurospora Depend on Five Components of a Histone Methyltransferase Complex, DCDC

(2010) Zachary A. Lewis et al.   PLoS Genetics

RNA editing: a driving force for adaptive evolution?

(2009) Willemijn M. Gommans et al.   BIOESSAYS

Origins and evolution of ADAR-mediated RNA editing

(2009) Yongfeng Jin et al.   IUBMB LIFE

Neurospora as a model fungus for studies in cytogenetics and sexual biology at Stanford

(2009) Namboori B. Raju   JOURNAL OF BIOSCIENCES

Phenotype of a Mechanosensitive Channel Mutant,mid-1, in a Filamentous Fungus,Neurospora crassa

(2008) Roger R. Lew et al.   EUKARYOTIC CELL

ATF-1 transcription factor regulates the expression of ccg-1 and cat-1 genes in response to fludioxonil under OS-2 MAP kinase in Neurospora crassa

(2008) Kazuhiro Yamashita et al.   FUNGAL GENETICS AND BIOLOGY