Systematic identification and validation of the reference genes from 60 RNA-Seq libraries in the scallop Mizuhopecten yessoensis

The embryonic transcriptome of Arabidopsis thaliana

(2019) Falko Hofmann et al.   Plant Reproduction

Transcriptome-wide identification of optimal reference genes for expression analysis of Pyropia yezoensis responses to abiotic stress

(2018) Dong Gao et al.   BMC GENOMICS

Expression of Cathepsin F in response to bacterial challenges in Yesso scallop Patinopecten yessoensis

(2018) Haobing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-wide identification and validation of new reference genes for transcript normalization in developmental and post-harvested fruits of Actinidia chinensis

(2018) Jian Liu et al.   GENE

Gonad Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Identifies Potential Genes Regulating the Sex Determination and Differentiation Process

(2018) Chenyang Yue et al.   MARINE BIOTECHNOLOGY

Identification and Characterization of Neuropeptides by Transcriptome and Proteome Analyses in a Bivalve Mollusc Patinopecten yessoensis

(2018) Meiwei Zhang et al.   Frontiers in Genetics

FOXL2 and DMRT1L Are Yin and Yang Genes for Determining Timing of Sex Differentiation in the Bivalve Mollusk Patinopecten yessoensis

(2018) Ruojiao Li et al.   Frontiers in Physiology

Effects of algal toxin okadaic acid on the non-specific immune and antioxidant response of bay scallop ( Argopecten irradians )

(2017) Cheng Chi et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-wide identification and expression profiling of the SOX gene family in a bivalve mollusc Patinopecten yessoensis

(2017) Jiachen Yu et al.   GENE

Different expression of sox17 gene during gametogenesis between scallop Chlamys farreri and vertebrates

(2017) Shaoshuai Liang et al.   GENE EXPRESSION PATTERNS

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

(2017) Yuli Li et al.   Nature Communications

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem

(2017) Marina A. Pombo et al.   Scientific Reports

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

(2017) Celine Everaert et al.   Scientific Reports

Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues

(2016) Jingyao Zeng et al.   GENE

Genome-wide identification of suitable zebrafishDanio rerioreference genes for normalization of gene expression data by RT-qPCR

(2016) H. Xu et al.   JOURNAL OF FISH BIOLOGY

Transcriptome Sequencing and Comparative Analysis of Ovary and Testis Identifies Potential Key Sex-Related Genes and Pathways in Scallop Patinopecten yessoensis

(2016) Yangping Li et al.   MARINE BIOTECHNOLOGY

Genome-wide identification and characterization of TRAF genes in the Yesso scallop ( Patinopecten yessoensis ) and their distinct expression patterns in response to bacterial challenge

(2015) Jing Wang et al.   FISH & SHELLFISH IMMUNOLOGY

In Vivo Administration of Scallop GnRH-Like Peptide Influences on Gonad Development in the Yesso Scallop, Patinopecten yessoensis

(2015) Kazue Nagasawa et al.   PLoS One

De novo transcriptome analysis of Perna viridis highlights tissue-specific patterns for environmental studies

(2014) Priscilla TY Leung et al.   BMC GENOMICS

Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes

(2014) Vaihiti Teaniniuraitemoana et al.   BMC GENOMICS

Transcriptional profiles of bovine in vivo pre-implantation development

(2014) Zongliang Jiang et al.   BMC GENOMICS

Identification of two secreted ferritin subunits involved in immune defense of Yesso scallop Patinopecten yessoensis

(2014) Yan Sun et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-wide identification of housekeeping genes in maize

(2014) Feng Lin et al.   PLANT MOLECULAR BIOLOGY

A Scallop IGF Binding Protein Gene: Molecular Characterization and Association of Variants with Growth Traits

(2014) Liying Feng et al.   PLoS One

Sex-Specific Regulation of AMP-Activated Protein Kinase (AMPK) in the Pacific Oyster Crassostrea gigas1

(2013) Eric Guévélou et al.   BIOLOGY OF REPRODUCTION

Validation of housekeeping genes as internal controls for studying gene expression during Pacific oyster (Crassostrea gigas) development by quantitative real-time PCR

(2013) Yishuai Du et al.   FISH & SHELLFISH IMMUNOLOGY

Identification of Reference Genes for qRT-PCR Analysis in Yesso Scallop Patinopecten yessoensis

(2013) Liying Feng et al.   PLoS One

Characteristic and Functional Analysis of Toll-like Receptors (TLRs) in the lophotrocozoan, Crassostrea gigas, Reveals Ancient Origin of TLR-Mediated Innate Immunity

(2013) Yang Zhang et al.   PLoS One

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Sexually dimorphic expression of foxl2 during gametogenesis in scallop Chlamys farreri, conserved with vertebrates

(2012) Xiao-Ling Liu et al.   DEVELOPMENT GENES AND EVOLUTION

Segmental duplications in genome-wide significant loci and housekeeping genes; warning for GAPDH and ACTB

(2012) Mahdi Ghani et al.   NEUROBIOLOGY OF AGING

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Development of a Pacific oyster (Crassostrea gigas) 31,918-feature microarray: identification of reference genes and tissue-enriched expression patterns

(2011) Nolwenn M Dheilly et al.   BMC GENOMICS

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets

(2010) Reena Narsai et al.   BMC PLANT BIOLOGY

Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR

(2010) Jana Jarošová et al.   BMC PLANT BIOLOGY

Identification of genes from flat oyster Ostrea edulis as suitable housekeeping genes for quantitative real time PCR

(2010) Benjamin Morga et al.   FISH & SHELLFISH IMMUNOLOGY

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes

(2009) Xinwei She et al.   BMC GENOMICS

Influence of food density and temperature on ingestion, growth and settlement of Pacific oyster larvae, Crassostrea gigas

(2008) B. Rico-Villa et al.   AQUACULTURE

How many human genes can be defined as housekeeping with current expression data?

(2008) Jiang Zhu et al.   BMC GENOMICS

Selecting a set of housekeeping genes for quantitative real-time PCR in normal and tetraploid haemocytes of soft-shell clams, Mya arenaria

(2008) A SIAH et al.   FISH & SHELLFISH IMMUNOLOGY

Cloning, characterization, and expression analysis of extracellular copper/zinc superoxide dismutase gene from bay scallop Argopecten irradians

(2008) Yongbo Bao et al.   FISH & SHELLFISH IMMUNOLOGY