Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem

Bacterial spot of tomato and pepper: diverseXanthomonasspecies with a wide variety of virulence factors posing a worldwide challenge

(2015) Neha Potnis et al.   MOLECULAR PLANT PATHOLOGY

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems

(2015) Ana L. M. Lacerda et al.   PLoS One

Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR Analyses

(2015) Oliver A. Müller et al.   PLoS One

Using RNA-Seq Data to Evaluate Reference Genes Suitable for Gene Expression Studies in Soybean

(2015) Aldrin Kay-Yuen Yim et al.   PLoS One

Assessment of reference gene stability in Rice stripe virus and Rice black streaked dwarf virus infection rice by quantitative Real-time PCR

(2015) Peng Fang et al.   Virology Journal

Reference gene selection for normalization of RT-qPCR gene expression data from Actinidia deliciosa leaves infected with Pseudomonas syringae pv. actinidiae

(2015) Milena Petriccione et al.   Scientific Reports

Pseudomonas syringae pv. tomato DC3000: A Model Pathogen for Probing Disease Susceptibility and Hormone Signaling in Plants

(2013) Xiu-Fang Xin et al.   Annual Review of Phytopathology

Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry and related tissues derived from RNA-Seq data

(2013) Mauricio González-Agüero et al.   BMC GENOMICS

Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)

(2013) Min Wang et al.   GENE

Reference genes in real-time PCR

(2013) Bartłomiej Kozera et al.   JOURNAL OF APPLIED GENETICS

Allelic variation in two distinctPseudomonas syringaeflagellin epitopes modulates the strength of plant immune responses but not bacterial motility

(2013) Christopher R. Clarke et al.   NEW PHYTOLOGIST

Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity

(2013) Hernan G Rosli et al.   GENOME BIOLOGY

Plant Innate Immunity: Perception of Conserved Microbial Signatures

(2012) Benjamin Schwessinger et al.   Annual Review of Plant Biology

Exploring plant transcriptomes using ultra high-throughput sequencing

(2011) L. Wang et al.   Briefings in Functional Genomics

NLR functions in plant and animal immune systems: so far and yet so close

(2011) Takaki Maekawa et al.   NATURE IMMUNOLOGY

Identification of Reference Genes for RT–qPCR Expression Analysis in Arabidopsis and Tomato Seeds

(2011) Bas J. W. Dekkers et al.   PLANT AND CELL PHYSIOLOGY

Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae

(2011) S. Cunnac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methods to Study PAMP-Triggered Immunity Using Tomato and Nicotiana benthamiana

(2010) Hanh P. Nguyen et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

A Prominent Role of the Flagellin Receptor FLAGELLIN-SENSING2 in Mediating Stomatal Response to Pseudomonas syringae pv tomato DC3000 in Arabidopsis

(2010) W. Zeng et al.   PLANT PHYSIOLOGY

Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress

(2009) Trond Løvdal et al.   ANALYTICAL BIOCHEMISTRY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references

(2009) S. Guenin et al.   JOURNAL OF EXPERIMENTAL BOTANY

How to do successful gene expression analysis using real-time PCR

(2009) Stefaan Derveaux et al.   METHODS

Genome-Wide Analysis of Differentially Expressed Genes During the Early Stages of Tomato Infection by a Potyvirus

(2009) Poliane Alfenas-Zerbini et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Next-generation DNA sequencing techniques

(2009) Wilhelm J. Ansorge   New Biotechnology

Innate Immunity in Plants: An Arms Race Between Pattern Recognition Receptors in Plants and Effectors in Microbial Pathogens

(2009) T. Boller et al.   SCIENCE

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

(2008) Marino Expósito-Rodríguez et al.   BMC PLANT BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants

(2008) Laurent Gutierrez et al.   PLANT BIOTECHNOLOGY JOURNAL

Towards a Systematic Validation of References in Real-Time RT-PCR

(2008) L. Gutierrez et al.   PLANT CELL