Genome-wide identification of housekeeping genes in maize

Selection of reliable reference genes for quantitative real-time polymerase chain reaction studies in maize grains

(2013) Vanessa Galli et al.   PLANT CELL REPORTS

Validation of reference genes for quantitative real-time PCR during Chinese wolfberry fruit development

(2013) Lijuan Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

Evaluation of candidate reference genes for qPCR in maize

(2012) Alessandro Manoli et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide identification and characterization of a panel of house-keeping genes in Schistosoma japonicum

(2012) Shuai Liu et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Reference gene selection for qPCR gene expression analysis of rust-infected wheat

(2012) Jakobus J. Scholtz et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Selection of Reference Genes for Normalizing Gene Expression During Seed Priming and Germination Using qPCR in Zea mays and Spinacia oleracea

(2011) Keting Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

Gene Expression Biomarkers Provide Sensitive Indicators of in Planta Nitrogen Status in Maize

(2011) X. S. Yang et al.   PLANT PHYSIOLOGY

Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes

(2011) Rebecca M. Davidson et al.   Plant Genome

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Structure and expression of the maize (Zea mays L.) SUN-domain protein gene family: evidence for the existence of two divergent classes of SUN proteins in plants.

(2010) Shaun P Murphy et al.   BMC PLANT BIOLOGY

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

(2010) Mitchell Guttman et al.   NATURE BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

(2009) Anna R Paolacci et al.   BMC MOLECULAR BIOLOGY

Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae

(2009) Marie-Ange Teste et al.   BMC MOLECULAR BIOLOGY

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

Profiling expression changes caused by a segmental aneuploid in maize

(2008) Irina Makarevitch et al.   BMC GENOMICS

How many human genes can be defined as housekeeping with current expression data?

(2008) Jiang Zhu et al.   BMC GENOMICS

Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR

(2008) Carlos Infante et al.   BMC MOLECULAR BIOLOGY

Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR

(2008) Shin-Young Hong et al.   BMC PLANT BIOLOGY

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants

(2008) Laurent Gutierrez et al.   PLANT BIOTECHNOLOGY JOURNAL

Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations

(2008) Tony Remans et al.   PLANTA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE