Towards population genomics in non-model species with large genomes: a case study of the marine zooplankton Calanus finmarchicus
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Towards population genomics in non-model species with large genomes: a case study of the marine zooplankton
Calanus finmarchicus
Authors
Keywords
-
Journal
Royal Society Open Science
Volume 6, Issue 2, Pages 180608
Publisher
The Royal Society
Online
2019-02-13
DOI
10.1098/rsos.180608
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Ecological population genomics in the marine environment
- (2016) Douglas L. Crawford et al. Briefings in Functional Genomics
- New view of population genetics of zooplankton: RAD-seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus
- (2016) L. Blanco-Bercial et al. MOLECULAR ECOLOGY
- The minimal amount of starting DNA for Agilent’s hybrid capture-based targeted massively parallel sequencing
- (2016) Jongsuk Chung et al. Scientific Reports
- Capturing protein-coding genes across highly divergent species
- (2016) Chenhong Li et al. BIOTECHNIQUES
- Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis
- (2015) I Smolina et al. MARINE ECOLOGY PROGRESS SERIES
- Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddy the water
- (2015) Bruce E. Deagle et al. MOLECULAR ECOLOGY
- Targeted capture in evolutionary and ecological genomics
- (2015) Matthew R. Jones et al. MOLECULAR ECOLOGY
- Exon capture phylogenomics: efficacy across scales of divergence
- (2015) Jason G. Bragg et al. Molecular Ecology Resources
- Haplotype-resolved genome sequencing: experimental methods and applications
- (2015) Matthew W. Snyder et al. NATURE REVIEWS GENETICS
- Low cost sequencing of mitogenomes from museum samples using baits capture and Ion Torrent
- (2015) Spyros Kollias et al. Conservation Genetics Resources
- Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis
- (2015) I Smolina et al. MARINE ECOLOGY PROGRESS SERIES
- Second-generation PLINK: rising to the challenge of larger and richer datasets
- (2015) Christopher C Chang et al. GigaScience
- Transcriptional profiling of reproductive development, lipid storage and molting throughout the last juvenile stage of the marine copepod Calanus finmarchicus
- (2014) Ann M Tarrant et al. Frontiers in Zoology
- Live discrimination of Calanus glacialis and C. finmarchicus females: can we trust phenological differences?
- (2014) Torkel Gissel Nielsen et al. MARINE BIOLOGY
- Ancient Whole Genome Enrichment Using Baits Built from Modern DNA
- (2014) Jacob M. Enk et al. MOLECULAR BIOLOGY AND EVOLUTION
- SimRAD: an R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches
- (2014) Olivier Lepais et al. Molecular Ecology Resources
- Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
- (2014) Christian Schlötterer et al. NATURE REVIEWS GENETICS
- De Novo Assembly of a Transcriptome for Calanus finmarchicus (Crustacea, Copepoda) – The Dominant Zooplankter of the North Atlantic Ocean
- (2014) Petra H. Lenz et al. PLoS One
- Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries
- (2013) Meredith L. Carpenter et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Haplotype Estimation Using Sequencing Reads
- (2013) Olivier Delaneau et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Detecting Natural Selection in Genomic Data
- (2013) Joseph J. Vitti et al. Annual Review of Genetics
- SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it
- (2013) Joseph Lachance et al. BIOESSAYS
- The MaSuRCA genome assembler
- (2013) Aleksey V. Zimin et al. BIOINFORMATICS
- Genotyping-by-sequencing in ecological and conservation genomics
- (2013) Shawn R. Narum et al. MOLECULAR ECOLOGY
- Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
- (2013) Brittany L. Hancock-Hanser et al. Molecular Ecology Resources
- Understanding the origin of species with genome-scale data: modelling gene flow
- (2013) Vitor Sousa et al. NATURE REVIEWS GENETICS
- Targeted Enrichment: Maximizing Orthologous Gene Comparisons across Deep Evolutionary Time
- (2013) Shannon M. Hedtke et al. PLoS One
- High evolutionary potential of marine zooplankton
- (2013) Katja T. C. A. Peijnenburg et al. Ecology and Evolution
- All SNPs Are Not Created Equal: Genome-Wide Association Studies Reveal a Consistent Pattern of Enrichment among Functionally Annotated SNPs
- (2013) Andrew J. Schork et al. PLoS Genetics
- Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
- (2012) Ke Bi et al. BMC GENOMICS
- Exome versus transcriptome sequencing in identifying coding region variants
- (2012) Chee-Seng Ku et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- Natural hybridization betweenCalanus finmarchicusandC. glacialis(Copepoda) in the Arctic and Northwest Atlantic
- (2012) Geneviève J. Parent et al. LIMNOLOGY AND OCEANOGRAPHY
- 2b-RAD: a simple and flexible method for genome-wide genotyping
- (2012) Shi Wang et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
- (2012) Eva-Maria Willing et al. PLoS One
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
- (2011) V. C. Mason et al. GENOME RESEARCH
- Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis)
- (2011) MARTIN C. FISCHER et al. MOLECULAR ECOLOGY
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Expanding whole exome resequencing into non-human primates
- (2011) Eric J Vallender GENOME BIOLOGY
- Applications of next generation sequencing in molecular ecology of non-model organisms
- (2010) R Ekblom et al. HEREDITY
- Estimating population structure from AFLP amplification intensity
- (2010) MATTHIEU FOLL et al. MOLECULAR ECOLOGY
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Genetic Structure Among 50 Species of the Northeastern Pacific Rocky Intertidal Community
- (2010) Ryan P. Kelly et al. PLoS One
- Basin-scale population genetic structure of the planktonic copepod Calanus finmarchicus in the North Atlantic Ocean
- (2010) Ebru Unal et al. PROGRESS IN OCEANOGRAPHY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Lipids and life strategy of ArcticCalanus
- (2009) Stig Falk-Petersen et al. Marine Biology Research
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Enrichment of sequencing targets from the human genome by solution hybridization
- (2009) Ryan Tewhey et al. GENOME BIOLOGY
- A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
- (2008) M. Foll et al. GENETICS
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- High dispersal potential has maintained long-term population stability in the North Atlantic copepod Calanus finmarchicus
- (2008) J. Provan et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now