Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
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Title
Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
Authors
Keywords
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Journal
Molecular Ecology Resources
Volume 13, Issue 2, Pages 254-268
Publisher
Wiley
Online
2013-01-26
DOI
10.1111/1755-0998.12059
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Note: Only part of the references are listed.- Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
- (2012) Jesse Dabney et al. BIOTECHNIQUES
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- (2012) Sebastián Duchene et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
- (2012) Anton Nekrutenko et al. NATURE REVIEWS GENETICS
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- Genomic Tools for Evolution and Conservation in the Chimpanzee: Pan troglodytes ellioti Is a Genetically Distinct Population
- (2012) Rory Bowden et al. PLoS Genetics
- Empirical comparison of single nucleotide polymorphisms and microsatellites for population and demographic analyses of bowhead whales
- (2012) PA Morin et al. Endangered Species Research
- Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae
- (2011) Julia T Vilstrup et al. BMC EVOLUTIONARY BIOLOGY
- Unraveling the rapid radiation of crested newts (Triturus cristatus superspecies) using complete mitogenomic sequences
- (2011) Ben Wielstra et al. BMC EVOLUTIONARY BIOLOGY
- Application of a method for estimating effective population size and admixture using diagnostic single nucleotide polymorphisms (SNPs): implications for conservation of threatened Paiute cutthroat trout (Oncorhynchus clarkii seleniris) in Silver King Creek, California
- (2011) Amanda J. Finger et al. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
- The genetic population structure of lacustrine sockeye salmon, Oncorhynchus nerka, in Japan as the endangered species
- (2011) Yuichiro Kogura et al. ENVIRONMENTAL BIOLOGY OF FISHES
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- (2011) Li Yu et al. MITOCHONDRION
- Evolution of Modern Birds Revealed by Mitogenomics: Timing the Radiation and Origin of Major Orders
- (2011) M. A. Pacheco et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA
- (2011) SARAH L. MESNICK et al. Molecular Ecology Resources
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
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- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
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- (2011) Yusuke Yamanoue et al. PLoS One
- Mitochondrial Genomes Reveal Slow Rates of Molecular Evolution and the Timing of Speciation in Beavers (Castor), One of the Largest Rodent Species
- (2011) Susanne Horn et al. PLoS One
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation
- (2011) Sebastián Duchêne et al. PLoS One
- Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths
- (2011) Jacob Enk et al. GENOME BIOLOGY
- A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
- (2011) Sheila Fisher et al. GENOME BIOLOGY
- Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
- (2011) Brian J Knaus et al. BMC ECOLOGY
- Positive selection on the killer whale mitogenome
- (2010) A. D. Foote et al. Biology Letters
- Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
- (2010) P. A. Morin et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective
- (2010) J. G. Inoue et al. MOLECULAR BIOLOGY AND EVOLUTION
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Ensembl 2011
- (2010) P. Flicek et al. NUCLEIC ACIDS RESEARCH
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- (2010) Yi-Chiao Chan et al. PLoS One
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- (2010) S. Lavoue et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
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- (2009) Tiratha Singh et al. BMC GENOMICS
- Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti)
- (2009) J. A. Jackson et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
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