Haplotype-resolved genome sequencing: experimental methods and applications
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Title
Haplotype-resolved genome sequencing: experimental methods and applications
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 16, Issue 6, Pages 344-358
Publisher
Springer Nature
Online
2015-05-07
DOI
10.1038/nrg3903
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Note: Only part of the references are listed.- Integrative analysis of haplotype-resolved epigenomes across human tissues
- (2015) Danny Leung et al. NATURE
- A Rapid Molecular Approach for Chromosomal Phasing
- (2015) John F. Regan et al. PLoS One
- Probabilistic single-individual haplotyping
- (2014) V. Kuleshov BIOINFORMATICS
- Programming and Inheritance of Parental DNA Methylomes in Mammals
- (2014) Lu Wang et al. CELL
- Single haplotype assembly of the human genome from a hydatidiform mole
- (2014) Karyn Meltz Steinberg et al. GENOME RESEARCH
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- (2014) Andrew Adey et al. GENOME RESEARCH
- The genomic landscape of Neanderthal ancestry in present-day humans
- (2014) Sriram Sankararaman et al. NATURE
- Resolving the complexity of the human genome using single-molecule sequencing
- (2014) Mark J. P. Chaisson et al. NATURE
- Decoding long nanopore sequencing reads of natural DNA
- (2014) Andrew H Laszlo et al. NATURE BIOTECHNOLOGY
- Whole-genome haplotyping using long reads and statistical methods
- (2014) Volodymyr Kuleshov et al. NATURE BIOTECHNOLOGY
- Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping
- (2014) Paula J P de Vree et al. NATURE BIOTECHNOLOGY
- Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease
- (2014) Mike A Nalls et al. NATURE GENETICS
- Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing
- (2014) Sasan Amini et al. NATURE GENETICS
- Inferring human population size and separation history from multiple genome sequences
- (2014) Stephan Schiffels et al. NATURE GENETICS
- A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
- (2014) Charles F. A. de Bourcy et al. PLoS One
- Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
- (2014) B. Vernot et al. SCIENCE
- Multiple haplotype-resolved genomes reveal population patterns of gene and protein diplotypes
- (2014) Margret R. Hoehe et al. Nature Communications
- Haplotype Estimation Using Sequencing Reads
- (2013) Olivier Delaneau et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads
- (2013) Kui Zhang et al. BIOINFORMATICS
- Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data
- (2013) W.-Y. Yang et al. BIOINFORMATICS
- Haplotype assembly in polyploid genomes and identical by descent shared tracts
- (2013) Derek Aguiar et al. BIOINFORMATICS
- Identification of gene fusions from human lung cancer mass spectrometry data
- (2013) Han Sun et al. BMC GENOMICS
- Genome Analyses of Single Human Oocytes
- (2013) Yu Hou et al. CELL
- Sequencing of isolated sperm cells for direct haplotyping of a human genome
- (2013) E. F. Kirkness et al. GENOME RESEARCH
- The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
- (2013) Andrew Adey et al. NATURE
- The complete genome sequence of a Neanderthal from the Altai Mountains
- (2013) Kay Prüfer et al. NATURE
- Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
- (2013) Siddarth Selvaraj et al. NATURE BIOTECHNOLOGY
- Truncating mutations of MAGEL2 cause Prader-Willi phenotypes and autism
- (2013) Christian P Schaaf et al. NATURE GENETICS
- Genome-wide association analysis identifies 13 new risk loci for schizophrenia
- (2013) Stephan Ripke et al. NATURE GENETICS
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
- Whole-genome haplotyping by dilution, amplification, and sequencing
- (2013) F. Kaper et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level
- (2013) D. E. Bauer et al. SCIENCE
- The genome sequence of the colonial chordate, Botryllus schlosseri
- (2013) Ayelet Voskoboynik et al. eLife
- On the design of clone-based haplotyping
- (2013) Christine Lo et al. GENOME BIOLOGY
- Genomic Patterns of Homozygosity in Worldwide Human Populations
- (2012) Trevor J. Pemberton et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome
- (2012) Wei Xie et al. CELL
- Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm
- (2012) Jianbin Wang et al. CELL
- The Life History of 21 Breast Cancers
- (2012) Serena Nik-Zainal et al. CELL
- HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data
- (2012) Derek Aguiar et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Non-invasive prenatal measurement of the fetal genome
- (2012) H. Christina Fan et al. NATURE
- Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells
- (2012) Brock A. Peters et al. NATURE
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- The expanding scope of DNA sequencing
- (2012) Jay Shendure et al. NATURE BIOTECHNOLOGY
- Extremely low-coverage sequencing and imputation increases power for genome-wide association studies
- (2012) Bogdan Pasaniuc et al. NATURE GENETICS
- Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity
- (2012) Lam C Tsoi et al. NATURE GENETICS
- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
- (2012) C. Zong et al. SCIENCE
- Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing
- (2012) S. Lu et al. SCIENCE
- Noninvasive Whole-Genome Sequencing of a Human Fetus
- (2012) J. O. Kitzman et al. Science Translational Medicine
- Strobe sequence design for haplotype assembly
- (2011) Christine Lo et al. BMC BIOINFORMATICS
- Relationship between Single Nucleotide Polymorphisms and Haplotypes in DPYD and Toxicity and Efficacy of Capecitabine in Advanced Colorectal Cancer
- (2011) M. J. Deenen et al. CLINICAL CANCER RESEARCH
- A comprehensively molecular haplotype-resolved genome of a European individual
- (2011) E.-K. Suk et al. GENOME RESEARCH
- An autosomal locus that controls chromosome-wide replication timing and mono-allelic expression
- (2011) Eric P. Stoffregen et al. HUMAN MOLECULAR GENETICS
- Haplotype phasing: existing methods and new developments
- (2011) Sharon R. Browning et al. NATURE REVIEWS GENETICS
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- (2010) H Christina Fan et al. NATURE BIOTECHNOLOGY
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- (2010) Li Ma et al. NATURE METHODS
- Parallel, tag-directed assembly of locally derived short sequence reads
- (2010) Joseph B Hiatt et al. NATURE METHODS
- Completely phased genome sequencing through chromosome sorting
- (2010) H. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) R. E. Green et al. SCIENCE
- Maternal Plasma DNA Sequencing Reveals the Genome-Wide Genetic and Mutational Profile of the Fetus
- (2010) Y. M. D. Lo et al. Science Translational Medicine
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- Direct determination of haplotypes from single DNA molecules
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- (2009) E. Lieberman-Aiden et al. SCIENCE
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- HapCUT: an efficient and accurate algorithm for the haplotype assembly problem
- (2008) V. Bansal et al. BIOINFORMATICS
- An MCMC algorithm for haplotype assembly from whole-genome sequence data
- (2008) V. Bansal et al. GENOME RESEARCH
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