A Pathogen and a Non-pathogen Spotted Fever Group Rickettsia Trigger Differential Proteome Signatures in Macrophages

The Unfolded Protein Response and Cell Fate Control

(2018) Claudio Hetz et al.   MOLECULAR CELL

A common mechanism of proteasome impairment by neurodegenerative disease-associated oligomers

(2018) Tiffany A. Thibaudeau et al.   Nature Communications

The interferon-stimulated gene product oligoadenylate synthetase-like protein enhances replication of Kaposi’s sarcoma-associated herpesvirus (KSHV) and interacts with the KSHV ORF20 protein

(2018) Kendra A. Bussey et al.   PLoS Pathogens

Impairment of protein degradation and proteasome function in hereditary neuropathies

(2017) Jordan J. S. VerPlank et al.   GLIA

Dengue Virus Activates the AMP Kinase-mTOR Axis To Stimulate a Proviral Lipophagy

(2017) Tristan X. Jordan et al.   JOURNAL OF VIROLOGY

Immune response against rickettsiae: lessons from murine infection models

(2017) Anke Osterloh   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

SWATH-MS as a tool for biomarker discovery: From basic research to clinical applications

(2017) Sandra Isabel Anjo et al.   PROTEOMICS

Macrophage Immunometabolism: Where Are We (Going)?

(2017) Jan Van den Bossche et al.   TRENDS IN IMMUNOLOGY

Wholly Rickettsia ! Reconstructed Metabolic Profile of the Quintessential Bacterial Parasite of Eukaryotic Cells

(2017) Timothy P. Driscoll et al.   mBio

The Proteasome Inhibition Model of Parkinson’s Disease

(2017) Eduard Bentea et al.   Journal of Parkinsons Disease

To Eat and to Be Eaten: Mutual Metabolic Adaptations of Immune Cells and Intracellular Bacterial Pathogens upon Infection

(2017) Wolfgang Eisenreich et al.   Frontiers in Cellular and Infection Microbiology

Sugar or Fat?—Metabolic Requirements for Immunity to Viral Infections

(2017) Hesham M. Shehata et al.   Frontiers in Immunology

Quantitative proteomics by SWATH-MS reveals sophisticated metabolic reprogramming in hepatocellular carcinoma tissues

(2017) Yanyan Gao et al.   Scientific Reports

Decreased serum apolipoprotein A1 levels are associated with poor survival and systemic inflammatory response in colorectal cancer

(2017) Päivi Sirniö et al.   Scientific Reports

Reprogramming mitochondrial metabolism in macrophages as an anti-inflammatory signal

(2016) Evanna L. Mills et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Emerging role of immunoproteasomes in pathophysiology

(2016) Gagandeep Kaur et al.   IMMUNOLOGY AND CELL BIOLOGY

Nonselective Persistence of a Rickettsia conorii Extrachromosomal Plasmid during Mammalian Infection

(2016) Sean P. Riley et al.   INFECTION AND IMMUNITY

The Unfolded Protein Response in Homeostasis and Modulation of Mammalian Immune Cells

(2016) Ana Sofia Martins et al.   INTERNATIONAL REVIEWS OF IMMUNOLOGY

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Proteome analysis of the macroscopically affected colonic mucosa of Crohn’s disease and intestinal tuberculosis

(2016) Lokesh A. Rukmangadachar et al.   Scientific Reports

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection

(2016) Yuan Li et al.   PLoS Pathogens

Differences in Intracellular Fate of Two Spotted Fever Group Rickettsia in Macrophage-Like Cells

(2016) Pedro Curto et al.   Frontiers in Cellular and Infection Microbiology

Immunometabolism governs dendritic cell and macrophage function

(2015) Luke A.J. O’Neill et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Correction: Amblyomma maculatum Feeding Augments Rickettsia parkeri Infection in a Rhesus Macaque Model: A Pilot Study

(2015) Kaikhushroo H. Banajee et al.   PLoS One

Short GeLC-SWATH: A fast and reliable quantitative approach for proteomic screenings

(2015) Sandra Isabel Anjo et al.   PROTEOMICS

Host Delivery of Favorite Meals for Intracellular Pathogens

(2015) Yousef Abu Kwaik et al.   PLoS Pathogens

The immunoproteasome and viral infection: a complex regulator of inflammation

(2015) Mary K. McCarthy et al.   Frontiers in Microbiology

M2 Polarization of Human Macrophages Favors Survival of the Intracellular Pathogen Chlamydia pneumoniae

(2015) Tanja Buchacher et al.   PLoS One

The return of metabolism: biochemistry and physiology of the pentose phosphate pathway

(2014) Anna Stincone et al.   BIOLOGICAL REVIEWS

Diversity of bacterial manipulation of the host ubiquitin pathways

(2014) Yan Zhou et al.   CELLULAR MICROBIOLOGY

Macrophage Activation and Polarization: Nomenclature and Experimental Guidelines

(2014) Peter J. Murray et al.   IMMUNITY

The Macrophage Paradox

(2014) Jordan V. Price et al.   IMMUNITY

Macrophage Polarization in Bacterial Infections

(2014) M. Benoit et al.   JOURNAL OF IMMUNOLOGY

Bacteria Fighting Back: How Pathogens Target and Subvert the Host Innate Immune System

(2014) L. Evan Reddick et al.   MOLECULAR CELL

Emerging functions of the unfolded protein response in immunity

(2014) Sophie Janssens et al.   NATURE IMMUNOLOGY

Bacteria, the endoplasmic reticulum and the unfolded protein response: friends or foes?

(2014) Jean Celli et al.   NATURE REVIEWS MICROBIOLOGY

Exploitation of the host ubiquitin system by human bacterial pathogens

(2014) Hiroshi Ashida et al.   NATURE REVIEWS MICROBIOLOGY

The role of protein clearance mechanisms in organismal ageing and age-related diseases

(2014) David Vilchez et al.   Nature Communications

Bacterial Effectors and Their Functions in the Ubiquitin-Proteasome System: Insight from the Modes of Substrate Recognition

(2014) Minsoo Kim et al.   Cells

Salmonella Require the Fatty Acid Regulator PPARδ for the Establishment of a Metabolic Environment Essential for Long-Term Persistence

(2013) Nicholas A. Eisele et al.   Cell Host & Microbe

PPARγ-Mediated Increase in Glucose Availability Sustains Chronic Brucella abortus Infection in Alternatively Activated Macrophages

(2013) Mariana N. Xavier et al.   Cell Host & Microbe

PathogenicRickettsiaspecies acquire vitronectin from human serum to promote resistance to complement-mediated killing

(2013) Sean P. Riley et al.   CELLULAR MICROBIOLOGY

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

(2013) Ben C Collins et al.   NATURE METHODS

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

(2013) Jean-Philippe Lambert et al.   NATURE METHODS

Metabolic host responses to infection by intracellular bacterial pathogens

(2013) Wolfgang Eisenreich et al.   Frontiers in Cellular and Infection Microbiology

Subversion of Phagocytosis for Pathogen Survival

(2012) Helen Sarantis et al.   Cell Host & Microbe

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Macrophage polarization and bacterial infections

(2011) Jean-Louis Mège et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Molecular Basis of Immunity to Rickettsial Infection Conferred through Outer Membrane Protein B

(2011) Yvonne Gar-Yun Chan et al.   INFECTION AND IMMUNITY

Mitochondrial Porin VDAC 1 Seems to Be Functional in Rickettsial Cells

(2009) Victor V. Emelyanov   Annals of the New York Academy of Sciences

Improved results in proteomics by use of local and peptide-class specific false discovery rates

(2009) Lau Sennels et al.   BMC BIOINFORMATICS

BDNF-Induced Changes in the Expression of the Translation Machinery in Hippocampal Neurons: Protein Levels and Dendritic mRNA

(2009) Bruno Manadas et al.   JOURNAL OF PROTEOME RESEARCH

Viral avoidance and exploitation of the ubiquitin system

(2009) Felix Randow et al.   NATURE CELL BIOLOGY

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

Rickettsial outer-membrane protein B (rOmpB) mediates bacterial invasion through Ku70 in an actin, c-Cbl, clathrin and caveolin 2-dependent manner

(2008) Yvonne G. Y. Chan et al.   CELLULAR MICROBIOLOGY

Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches

(2008) Wilfred H. Tang et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Studies Reveal Coordinated Changes in T-Cell Expression Patterns upon Infection with Human Immunodeficiency Virus Type 1

(2008) J. H. Ringrose et al.   JOURNAL OF VIROLOGY

Emerging and re-emerging rickettsioses: endothelial cell infection and early disease events

(2008) David H. Walker et al.   NATURE REVIEWS MICROBIOLOGY