The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

STAMS: STRING-assisted module search for genome wide association studies and application to autism

(2016) Sara Hillenmeyer et al.   BIOINFORMATICS

APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks

(2016) Diego Alonso-López et al.   NUCLEIC ACIDS RESEARCH

Network-based in silico drug efficacy screening

(2016) Emre Guney et al.   Nature Communications

Genic insights from integrated human proteomics in GeneCards

(2016) Simon Fishilevich et al.   Database-The Journal of Biological Databases and Curation

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

(2015) Andrea Franceschini et al.   BIOINFORMATICS

DISEASES: Text mining and data integration of disease–gene associations

(2015) Sune Pletscher-Frankild et al.   METHODS

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks

(2015) Aaron K. Wong et al.   NUCLEIC ACIDS RESEARCH

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Integrated interactions database: tissue-specific view of the human and model organism interactomes

(2015) Max Kotlyar et al.   NUCLEIC ACIDS RESEARCH

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation

(2015) K. B. Emdal et al.   Science Signaling

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation

(2015) K. B. Emdal et al.   Science Signaling

Comprehensive comparison of large-scale tissue expression datasets

(2015) Alberto Santos et al.   PeerJ

Functional association networks as priors for gene regulatory network inference

(2014) Matthew E. Studham et al.   BIOINFORMATICS

Selecting causal genes from genome-wide association studies via functionally coherent subnetworks

(2014) Murat Taşan et al.   NATURE METHODS

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

(2014) Joanna S. Amberger et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

(2014) J. X. Binder et al.   Database-The Journal of Biological Databases and Curation

Network analysis of GWAS data

(2013) Mark DM Leiserson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Network-assisted analysis to prioritize GWAS results: principles, methods and perspectives

(2013) Peilin Jia et al.   HUMAN GENETICS

Network-based stratification of tumor mutations

(2013) Matan Hofree et al.   NATURE METHODS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

GeneMANIA Prediction Server 2013 Update

(2013) Khalid Zuberi et al.   NUCLEIC ACIDS RESEARCH

FunCoup 3.0: database of genome-wide functional coupling networks

(2013) Thomas Schmitt et al.   NUCLEIC ACIDS RESEARCH

Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics

(2013) Yupeng Cun et al.   PLoS One

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Genes2FANs: connecting genes through functional association networks

(2012) Ruth Dannenfelser et al.   BMC BIOINFORMATICS

HINT: High-quality protein interactomes and their applications in understanding human disease

(2012) Jishnu Das et al.   BMC Systems Biology

ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics

(2012) Olubunmi Abel et al.   HUMAN MUTATION

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

(2012) Sandra Orchard et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

How Many Protein-Protein Interactions Types Exist in Nature?

(2012) Leonardo Garma et al.   PLoS One

Human diseases through the lens of network biology

(2012) Laura I. Furlong   TRENDS IN GENETICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

(2011) B. Turner et al.   Database-The Journal of Biological Databases and Curation

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected

(2010) M. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function

(2008) Weidong Tian et al.   GENOME BIOLOGY