Incomplete estimates of genetic diversity within species: Implications for DNA barcoding

DNA barcoding as a regulatory tool for seafood authentication in Canada

(2018) Hanan R. Shehata et al.   FOOD CONTROL

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

(2017) Alison G. Nazareno et al.   Molecular Ecology Resources

Evaluating sampling strategy for DNA barcoding study of coastal and inland halo-tolerant Poaceae and Chenopodiaceae: A case study for increased sample size

(2017) Peng-Cheng Yao et al.   PLoS One

An approach based on the total-species accumulation curve and higher taxon richness to estimate realistic upper limits in regional species richness

(2017) Stanislao Bevilacqua et al.   Ecology and Evolution

Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants

(2017) Mike J. Wilkinson et al.   Scientific Reports

Counting animal species with DNA barcodes: Canadian insects

(2016) Paul D. N. Hebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera

(2016) Marko Mutanen et al.   SYSTEMATIC BIOLOGY

Early-diverging bumblebees from across the roof of the world: the high-mountain subgenus Mendacibombus revised from species’ gene coalescents and morphology (Hymenoptera, Apidae)

(2016) PAUL H. WILLIAMS et al.   ZOOTAXA

Effects of Wolbachia on mitochondrial DNA variation in populations of Athetis lepigone (Lepidoptera: Noctuidae) in China

(2016) Fang Chen et al.   Mitochondrial DNA Part A

Conservation of Forest Biodiversity: how sample size affects the estimation of genetic parameters

(2015) Leonardo S. da Costa et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

Mitogenome metadata: current trends and proposed standards

(2015) Jeff H. T. Strohm et al.   Mitochondrial DNA

Species are hypotheses: avoid connectivity assessments based on pillars of sand

(2015) Eric Pante et al.   MOLECULAR ECOLOGY

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

A simulation study of sample size for DNA barcoding

(2015) Arong Luo et al.   Ecology and Evolution

Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons

(2015) Margaret E. Hunter et al.   PLoS One

Species-accumulation curves and taxonomic surrogates: an integrated approach for estimation of regional species richness

(2014) Antonio Terlizzi et al.   DIVERSITY AND DISTRIBUTIONS

DNA Barcoding Works in Practice but Not in (Neutral) Theory

(2014) Mark Y. Stoeckle et al.   PLoS One

Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences

(2014) Mikko Pentinsaari et al.   PLoS One

Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts

(2014) Peter Huemer et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Genetic Patterns in European Geometrid Moths Revealed by the Barcode Index Number (BIN) System

(2013) Axel Hausmann et al.   PLoS One

On the comparison of population-level estimates of haplotype and nucleotide diversity: a case study using the gene cox1 in animals

(2012) W P Goodall-Copestake et al.   HEREDITY

Sampling Strategy and Potential Utility of Indels for DNA Barcoding of Closely Related Plant Species: A Case Study in Taxus

(2012) Jie Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach

(2012) Melanie Lou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Wolbachia and DNA Barcoding Insects: Patterns, Potential, and Problems

(2012) M. Alex Smith et al.   PLoS One

Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies

(2012) Marie L. Hale et al.   PLoS One

Frequency Matrix Approach Demonstrates High Sequence Quality in Avian BARCODEs and Highlights Cryptic Pseudogenes

(2012) Mark Y. Stoeckle et al.   PLoS One

A Simple 2D Non-Parametric Resampling Statistical Approach to Assess Confidence in Species Identification in DNA Barcoding—An Alternative to Likelihood and Bayesian Approaches

(2012) Qian Jin et al.   PLoS One

Revealing the Hyperdiverse Mite Fauna of Subarctic Canada through DNA Barcoding

(2012) Monica R. Young et al.   PLoS One

The Effect of Geographical Scale of Sampling on DNA Barcoding

(2012) J. Bergsten et al.   SYSTEMATIC BIOLOGY

FISH-BOL and seafood identification: Geographically dispersed case studies reveal systemic market substitution across Canada

(2011) Robert Hanner et al.   Mitochondrial DNA

Five years of FISH-BOL: Brief status report

(2011) Sven Becker et al.   Mitochondrial DNA

The FISH-BOL collaborators' protocol

(2011) Dirk Steinke et al.   Mitochondrial DNA

DNA barcoding of billfishes

(2011) Robert Hanner et al.   Mitochondrial DNA

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Neotropical Bats: Estimating Species Diversity with DNA Barcodes

(2011) Elizabeth L. Clare et al.   PLoS One

Genetic calibration of species diversity among North America's freshwater fishes

(2011) J. April et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary informatics: unifying knowledge about the diversity of life

(2011) Cynthia S. Parr et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

(2009) Frederic Austerlitz et al.   BMC BIOINFORMATICS

Learning to classify species with barcodes

(2009) Paola Bertolazzi et al.   BMC BIOINFORMATICS

Spatially constrained rarefaction: incorporating the autocorrelated structure of biological communities into sample-based rarefaction

(2009) A. Chiarucci et al.   COMMUNITY ECOLOGY

Which function describes the species-area relationship best? A review and empirical evaluation

(2009) Jürgen Dengler   JOURNAL OF BIOGEOGRAPHY

The campaign to DNA barcode all fishes, FISH-BOL

(2009) R. D. Ward et al.   JOURNAL OF FISH BIOLOGY

Sample size and haplotype richness in population samples of the lichen-forming ascomycete Xanthoria parietina

(2009) Louise LINDBLOM   LICHENOLOGIST

DNA barcoding of Pacific Canada’s fishes

(2009) Dirk Steinke et al.   MARINE BIOLOGY

Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach

(2009) EUGENE H.-K. WONG et al.   Molecular Ecology Resources

Mitochondrial DNA barcoding detects some species that are real, and some that are not

(2009) KANCHON K. DASMAHAPATRA et al.   Molecular Ecology Resources

Estimating sample sizes for DNA barcoding

(2009) A.B. Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sampling Error Does Not Invalidate the Yule-Coalescent Model for Species Delimitation. A Response to Lohse (2009)

(2009) Anna Papadopoulou et al.   SYSTEMATIC BIOLOGY

Can mtDNA Barcodes Be Used to Delimit Species? A Response to Pons et al. (2006)

(2009) Konrad Lohse   SYSTEMATIC BIOLOGY

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

(2009) Michael T. Monaghan et al.   SYSTEMATIC BIOLOGY

The effects of sample size on population genetic diversity estimates in song sparrows Melospiza melodia

(2008) Christin L. Pruett et al.   JOURNAL OF AVIAN BIOLOGY

Identifying the source of species invasions: sampling intensity vs. genetic diversity

(2008) JIM R. MUIRHEAD et al.   MOLECULAR ECOLOGY

Testing the Reliability of Genetic Methods of Species Identification via Simulation

(2008) Howard A. Ross et al.   SYSTEMATIC BIOLOGY