Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants

Review and future prospects for DNA barcoding methods in forensic palynology

(2016) Karen L. Bell et al.   Forensic Science International-Genetics

From barcodes to genomes: extending the concept of DNA barcoding

(2016) Eric Coissac et al.   MOLECULAR ECOLOGY

Promise and Challenge of DNA Barcoding in Venus Slipper (Paphiopedilum)

(2016) Yan-Yan Guo et al.   PLoS One

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

(2016) Patrick D. Schloss et al.   PeerJ

An authenticity survey of herbal medicines from markets in China using DNA barcoding

(2016) Jianping Han et al.   Scientific Reports

DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens

(2015) Thierry Comtet et al.   BIOLOGICAL INVASIONS

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

NGS metabarcoding proves successful for quantitative assessment of symbiont abundance: the case of feather mites on birds

(2015) J. Diaz-Real et al.   EXPERIMENTAL AND APPLIED ACAROLOGY

Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly

(2015) Yan-Jie Feng et al.   Molecular Ecology Resources

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach

(2015) Wiebke Sickel et al.   BMC ECOLOGY

Application of DNA Barcodes in Asian Tropical Trees – A Case Study from Xishuangbanna Nature Reserve, Southwest China

(2015) Xiao-cui Huang et al.   PLoS One

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

(2015) Shadi Shokralla et al.   Scientific Reports

High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

(2015) Franck Lejzerowicz et al.   Scientific Reports

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms

(2012) Wendy L Clement et al.   BMC EVOLUTIONARY BIOLOGY

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Phylogenetic analyses ofTolpisAdans. (Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization

(2012) Michael Gruenstaeudl et al.   CLADISTICS

Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case

(2012) Massimiliano Virgilio et al.   PLoS One

Barcoding and Border Biosecurity: Identifying Cyprinid Fishes in the Aquarium Trade

(2012) Rupert A. Collins et al.   PLoS One

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Plant DNA Barcodes Can Accurately Estimate Species Richness in Poorly Known Floras

(2011) Craig Costion et al.   PLoS One

High universality of matK primers for barcoding gymnosperms

(2011) Yan LI et al.   Journal of Systematics and Evolution

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

(2011) Jordana T Bell et al.   GENOME BIOLOGY

An evaluation of candidate plant DNA barcodes and assignment methods in diagnosing 29 species in the genus Agalinis (Orobanchaceae)

(2010) James B. Pettengill et al.   AMERICAN JOURNAL OF BOTANY

DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers

(2010) J. H. Lowenstein et al.   Biology Letters

DNA barcoding of the Lemnaceae, a family of aquatic monocots

(2010) Wenqin Wang et al.   BMC PLANT BIOLOGY

Broad-scale amplification of matK for DNA barcoding plants, a technical note

(2010) LUKE T. DUNNING et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species

(2010) Sribash Roy et al.   PLoS One

Selection of candidate coding DNA barcoding regions for use on land plants

(2009) CAROLINE S. FORD et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Estimating sample sizes for DNA barcoding

(2009) A.B. Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

How Many Loci Does it Take to DNA Barcode a Crocus?

(2009) Ole Seberg et al.   PLoS One

Identification of Amazonian Trees with DNA Barcodes

(2009) Mailyn Adriana Gonzalez et al.   PLoS One

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE