Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage

(2017) Stuart C. Willis et al.   Molecular Ecology Resources

A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird

(2016) Sara A. Kaiser et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Close-Kin Mark-Recapture

(2016) Mark V. Bravington et al.   STATISTICAL SCIENCE

Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics

(2014) Kenneth K. Kidd et al.   Forensic Science International-Genetics

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

(2014) Lucia R. Weinman et al.   Molecular Ecology Resources

Mendel: the Swiss army knife of genetic analysis programs

(2013) Kenneth Lange et al.   BIOINFORMATICS

Large-scale parentage analysis reveals reproductive patterns and heritability of spawn timing in a hatchery population of steelhead (Oncorhynchus mykiss)

(2013) Alicia Abadía-Cardoso et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs

(2012) Andrew J Pakstis et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Combining Markers into Haplotypes Can Improve Population Structure Inference

(2011) Lucie M. Gattepaille et al.   GENETICS

Discovery and characterization of single nucleotide polymorphisms in Chinook salmon,Oncorhynchus tshawytscha

(2011) A. J. CLEMENTO et al.   Molecular Ecology Resources

Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout,Oncorhynchus mykiss

(2011) ALICIA ABADÍA-CARDOSO et al.   Molecular Ecology Resources

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Wild pedigrees: the way forward

(2008) J.M Pemberton   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES