Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction-site associated DNA sequencing for the resolution of complex spatial structure

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

(2014) Ross D Houston et al.   BMC GENOMICS

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

(2014) Serap Gonen et al.   BMC GENOMICS

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

(2014) Wesley A. Larson et al.   Evolutionary Applications

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

(2014) Jean-Sébastien Moore et al.   MOLECULAR ECOLOGY

Landscape structure and climatic variation determine Atlantic salmon genetic connectivity in the Northwest Atlantic

(2013) Ian R. Bradbury et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

DIFFERENTIAL INTROGRESSION IN A MOSAIC HYBRID ZONE REVEALS CANDIDATE BARRIER GENES

(2013) Erica L. Larson et al.   EVOLUTION

LANDSCAPE GENOMICS IN ATLANTIC SALMON (SALMO SALAR): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION

(2013) Bourret Vincent et al.   EVOLUTION

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

(2013) Ian R. Bradbury et al.   Evolutionary Applications

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

(2013) Paul A. Hohenlohe et al.   MOLECULAR ECOLOGY

Mature male parr contribution to the effective size of an anadromous Atlantic salmon (Salmo salar) population over 30 years

(2013) Devon L. Johnstone et al.   MOLECULAR ECOLOGY

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

Homing and straying by anadromous salmonids: a review of mechanisms and rates

(2013) Matthew L. Keefer et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis

(2012) Silje Brenna-Hansen et al.   BMC GENOMICS

“Riverscape” genetics: river characteristics influence the genetic structure and diversity of anadromous and freshwater Atlantic salmon (Salmo salar) populations in northwest Russia

(2012) Mikhail Yu. Ozerov et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Asymmetrical viability in backcrosses between highly divergent populations of Atlantic salmon (Salmo salar): implications for conservation

(2012) Eef Cauwelier et al.   CONSERVATION GENETICS

Distribution and biological characteristics of Atlantic salmon (Salmo salar) at Greenland based on the analysis of historical tag recoveries

(2012) D. G. Reddin et al.   ICES JOURNAL OF MARINE SCIENCE

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring

(2012) S. Lamichhaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Maintenance of asymmetric hybridization between Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) via postzygotic barriers and paternal effects

(2011) David Álvarez et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Contemporary nuclear and mitochondrial genetic clines in a north temperate estuarine fish reflect Pleistocene vicariance

(2011) IR Bradbury et al.   MARINE ECOLOGY PROGRESS SERIES

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Temporally stable population-specific differences in run timing of one-sea-winter Atlantic salmon returning to a large river system

(2010) Juha-Pekka Vähä et al.   Evolutionary Applications

Phylogeography of 3 North Atlantic Wolffish species (Anarhichas spp.) with Phylogenetic Relationships within the Family Anarhichadidae

(2010) Megan R. McCusker et al.   JOURNAL OF HEREDITY

Using differential introgression in hybrid zones to identify genomic regions involved in speciation

(2010) BRET A. PAYSEUR   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Comparative survey of within-river genetic structure in Atlantic salmon; relevance for management and conservation

(2008) Mélanie Dionne et al.   CONSERVATION GENETICS

Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation

(2008) MÉLANIE DIONNE et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One