Genomewide introgressive hybridization patterns in wild Atlantic salmon influenced by inadvertent gene flow from hatchery releases

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

Genetic introgression of farmed salmon in native populations: quantifying the relative influence of population size and frequency of escapees

(2015) M Heino et al.   Aquaculture Environment Interactions

Development of diagnostic microsatellite markers from whole-genome sequences ofAmmodramussparrows for assessing admixture in a hybrid zone

(2015) Adrienne I. Kovach et al.   Ecology and Evolution

Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis)

(2014) Fabien C. Lamaze et al.   MOLECULAR ECOLOGY

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

(2014) Jean-Sébastien Moore et al.   MOLECULAR ECOLOGY

Interspecific introgressive origin of genomic diversity in the house mouse

(2014) Kevin J. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A standardized method for quantifying unidirectional genetic introgression

(2014) Sten Karlsson et al.   Ecology and Evolution

Atlantic salmon populations invaded by farmed escapees: quantifying genetic introgression with a Bayesian approach and SNPs

(2013) Kevin Glover et al.   BMC GENETICS

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.)

(2013) Mikhail Ozerov et al.   BMC GENOMICS

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

(2013) Paul A. Hohenlohe et al.   MOLECULAR ECOLOGY

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Finding Markers That Make a Difference: DNA Pooling and SNP-Arrays Identify Population Informative Markers for Genetic Stock Identification

(2013) Mikhail Ozerov et al.   PLoS One

Source-Sink Estimates of Genetic Introgression Show Influence of Hatchery Strays on Wild Chum Salmon Populations in Prince William Sound, Alaska

(2013) James R. Jasper et al.   PLoS One

Changes in the genetic structure of Atlantic salmon populations over four decades reveal substantial impacts of stocking and potential resiliency

(2013) Charles Perrier et al.   Ecology and Evolution

Alternative forms for genomic clines

(2013) Benjamin M. Fitzpatrick   Ecology and Evolution

Genetic mapping of quantitative trait loci (QTL) for body-weight in Atlantic salmon (Salmo salar) using a 6.5K SNP array

(2012) Alejandro P. Gutierrez et al.   AQUACULTURE

Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations

(2012) Fabien C. Lamaze et al.   Evolutionary Applications

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

(2012) Matthieu Bruneaux et al.   MOLECULAR ECOLOGY

Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)

(2012) FABIEN C. LAMAZE et al.   MOLECULAR ECOLOGY

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Three Decades of Farmed Escapees in the Wild: A Spatio-Temporal Analysis of Atlantic Salmon Population Genetic Structure throughout Norway

(2012) Kevin A. Glover et al.   PLoS One

Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse (Mus musculus)

(2012) Fabian Staubach et al.   PLoS Genetics

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

Temporal change in genetic integrity suggests loss of local adaptation in a wild Atlantic salmon (Salmo salar) population following introgression by farmed escapees

(2011) V Bourret et al.   HEREDITY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Is hatchery stocking a help or harm?

(2010) Hitoshi Araki et al.   AQUACULTURE

Fast Transcriptional Responses to Domestication in the Brook Charr Salvelinus fontinalis

(2010) C. Sauvage et al.   GENETICS

Comparative Genomics Identifies Candidate Genes for Infectious Salmon Anemia (ISA) Resistance in Atlantic Salmon (Salmo salar)

(2010) Jieying Li et al.   MARINE BIOTECHNOLOGY

Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach

(2010) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

(2010) A. D. MARIE et al.   MOLECULAR ECOLOGY

Rapid spread of invasive genes into a threatened native species

(2010) Benjamin M. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals

(2010) Linda Laikre et al.   TRENDS IN ECOLOGY & EVOLUTION

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Carry-over effect of captive breeding reduces reproductive fitness of wild-born descendants in the wild

(2009) H. Araki et al.   Biology Letters

Admixture analysis of stocked brown trout populations using mapped microsatellite DNA markers: indigenous trout persist in introgressed populations

(2009) M. M. Hansen et al.   Biology Letters

Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of muscle, liver and brain transcriptomes

(2009) Wendy Tymchuk et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Long-term changes in the fine-scale population structure of coho salmon populations (Oncorhynchus kisutch) subject to extensive supportive breeding

(2009) W H Eldridge et al.   HEREDITY

Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations

(2009) A. W. NOLTE et al.   MOLECULAR ECOLOGY

A new method for estimating effective population sizes from a single sample of multilocus genotypes

(2009) JINLIANG WANG   MOLECULAR ECOLOGY

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

(2009) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines

(2009) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

The Genome Response to Artificial Selection: A Case Study in Dairy Cattle

(2009) Laurence Flori et al.   PLoS One

An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): Implications for supportive breeding programs

(2008) Simon Blanchet et al.   BIOLOGICAL CONSERVATION

Comparative survey of within-river genetic structure in Atlantic salmon; relevance for management and conservation

(2008) Mélanie Dionne et al.   CONSERVATION GENETICS

Temporally stable genetic structure and low migration in an Atlantic salmon population complex: implications for conservation and management

(2008) Juha-Pekka Vähä et al.   Evolutionary Applications

Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome

(2007) CHRISTIAN ROBERGE et al.   MOLECULAR ECOLOGY

The nature of fisheries- and farming-induced evolution

(2007) JEFFREY A. HUTCHINGS et al.   MOLECULAR ECOLOGY