An Integrated Transcriptome and Proteome Analysis Reveals Putative Regulators of Adventitious Root Formation in Taxodium ‘Zhongshanshan’

Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots

(2018) Sian Liu et al.   INDUSTRIAL CROPS AND PRODUCTS

De novo sequencing, assembly, and analysis of Iris lactea var. chinensis roots’ transcriptome in response to salt stress

(2018) Chunsun Gu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Auxin Control in the Formation of Adventitious Roots

(2018) Tiberia I. POP et al.   Notulae Botanicae Horti Agrobotanici Cluj-Napoca

Identification of suitable reference genes in Taxodium ‘Zhongshanshan’ under abiotic stresses

(2017) Zhiquan Wang et al.   TREES-STRUCTURE AND FUNCTION

Cloning and Characterization of ThSHRs and ThSCR Transcription Factors in Taxodium Hybrid ‘Zhongshanshan 406’

(2017) Zhiquan Wang et al.   Genes

Comparative Transcriptome Analysis of Male and Female Conelets and Development of Microsatellite Markers in Pinus bungeana, an Endemic Conifer in China

(2017) Dong Duan et al.   Genes

An integrated analysis based on transcriptome and proteome reveals deastringency-related genes in CPCNA persimmon

(2017) Wenxing Chen et al.   Scientific Reports

Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

(2016) Cintia L. Ribeiro et al.   BMC PLANT BIOLOGY

Transcriptome analysis of the Taxodium ‘Zhongshanshan 405’ roots in response to salinity stress

(2016) Chaoguang Yu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Reviewing current knowledge on olive ( Olea europaea L.) adventitious root formation

(2016) Sara Porfírio et al.   SCIENTIA HORTICULTURAE

Molecular cloning, expression analysis and subcellular localization of four DELLA genes from hybrid poplar

(2016) Sian Liu et al.   SpringerPlus

Gene expression profiling during adventitious root formation in carnation stem cuttings

(2015) Carlos Villacorta-Martín et al.   BMC GENOMICS

Physiological and Molecular Regulation of Adventitious Root Formation

(2015) Ling Guan et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Transcriptome profiling of indole-3-butyric acid-induced adventitious root formation in softwood cuttings of the Catalpa bungei variety ‘YU-1’ at different developmental stages

(2015) Peng Wang et al.   Genes & Genomics

Plant Growth Regulators: Backgrounds and Uses in Plant Production

(2015) Wilhelm Rademacher   JOURNAL OF PLANT GROWTH REGULATION

Methods of integrating data to uncover genotype–phenotype interactions

(2015) Marylyn D. Ritchie et al.   NATURE REVIEWS GENETICS

TwoWUSCHEL-related HOMEOBOXgenes,PeWOX11aandPeWOX11b, are involved in adventitious root formation of poplar

(2015) Meng Xu et al.   PHYSIOLOGIA PLANTARUM

Transcript profiling analysis reveals crucial genes regulating main metabolism during adventitious root formation in cuttings of Morus alba L.

(2015) XiaoLong Du et al.   PLANT GROWTH REGULATION

Adventitious Roots and Lateral Roots: Similarities and Differences

(2014) Catherine Bellini et al.   Annual Review of Plant Biology

The GRAS gene family in pine: transcript expression patterns associated with the maturation-related decline of competence to form adventitious roots

(2014) Dolores Abarca et al.   BMC PLANT BIOLOGY

De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging

(2014) Baiyan Qi et al.   BMC PLANT BIOLOGY

Adventitious root formation in tree species: involvement of transcription factors

(2014) Valérie Legué et al.   PHYSIOLOGIA PLANTARUM

The Beet Cyst Nematode Heterodera schachtii Modulates the Expression of WRKY Transcription Factors in Syncytia to Favour Its Development in Arabidopsis Roots

(2014) Muhammad Amjad Ali et al.   PLoS One

IQuant: An automated pipeline for quantitative proteomics based upon isobaric tags

(2014) Bo Wen et al.   PROTEOMICS

Transcriptomic analysis reveals ethylene as stimulator and auxin as regulator of adventitious root formation in petunia cuttings

(2014) Uwe Druege et al.   Frontiers in Plant Science

Proteomic changes in the base of chrysanthemum cuttings during adventitious root formation

(2013) Ruixia Liu et al.   BMC GENOMICS

iTRAQ protein profile analysis of Citrus sinensis roots in response to long-term boron-deficiency

(2013) Lin-Tong Yang et al.   Journal of Proteomics

Quantitative Proteomics Reveals the Temperature-Dependent Proteins Encoded by a Series of Cluster Genes inThermoanaerobacter Tengcongensis

(2013) Zhen Chen et al.   MOLECULAR & CELLULAR PROTEOMICS

PIF3 Is Involved in the Primary Root Growth Inhibition of Arabidopsis Induced by Nitric Oxide in the Light

(2013) Sulan Bai et al.   Molecular Plant

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Auxin: a master regulator in plant root development

(2013) Shivani Saini et al.   PLANT CELL REPORTS

When stress and development go hand in hand: main hormonal controls of adventitious rooting in cuttings

(2013) Cibele T. da Costa et al.   Frontiers in Plant Science

Transcriptome analysis of stem development in the tumourous stem mustard Brassica juncea var. tumida Tsen et Lee by RNA sequencing

(2012) Quan Sun et al.   BMC PLANT BIOLOGY

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

The AINTEGUMENTA LIKE1 Homeotic Transcription Factor PtAIL1 Controls the Formation of Adventitious Root Primordia in Poplar

(2012) A. Rigal et al.   PLANT PHYSIOLOGY

Genome-Wide Transcriptome and Proteome Analysis on Different Developmental Stages of Cordyceps militaris

(2012) Yalin Yin et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptome to proteome and back to genome

(2011) Mary Muers   NATURE REVIEWS GENETICS

Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis

(2011) Yuhee Chung et al.   PLANT JOURNAL

CsSCL1 is differentially regulated upon maturation in chestnut microshoots and is specifically expressed in rooting-competent cells

(2011) J. M. Vielba et al.   TREE PHYSIOLOGY

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

The Cytokinin Type-B Response Regulator PtRR13 Is a Negative Regulator of Adventitious Root Development in Populus

(2009) G. A. Ramirez-Carvajal et al.   PLANT PHYSIOLOGY

Detection of quantitative trait loci influencing growth trajectories of adventitious roots in Populus using functional mapping

(2009) Bo Zhang et al.   Tree Genetics & Genomes

Repeatability of the Pedar-X® in-shoe pressure measuring system

(2009) A.K. Ramanathan et al.   Foot and Ankle Surgery

Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures

(2008) Nijat Imin et al.   BMC PLANT BIOLOGY

N,N′-bis-(2,3-Methylenedioxyphenyl)urea and N,N′-bis-(3,4-methylenedioxyphenyl)urea enhance adventitious rooting in Pinus radiata and affect expression of genes induced during adventitious rooting in the presence of exogenous auxin

(2008) Ada Ricci et al.   PLANT SCIENCE