Quantitative Proteomics Reveals the Temperature-Dependent Proteins Encoded by a Series of Cluster Genes inThermoanaerobacter Tengcongensis

Comparative Evaluation of Two Isobaric Labeling Tags, DiART and iTRAQ

(2012) Zhen Chen et al.   ANALYTICAL CHEMISTRY

Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus

(2012) Ekaterina Y. Bezsudnova et al.   BIOCHIMIE

The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response

(2012) Sonya T. Dyhrman et al.   PLoS One

Improved Precision of iTRAQ and TMT Quantification by an Axial Extraction Field in an Orbitrap HCD Cell

(2011) Peter Pichler et al.   ANALYTICAL CHEMISTRY

General Statistical Modeling of Data from Protein Relative Expression Isobaric Tags

(2011) Florian P. Breitwieser et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Proteomic Analysis of the Heat Stress Response inClostridium difficileStrain 630

(2011) Shailesh Jain et al.   JOURNAL OF PROTEOME RESEARCH

Transcriptome Analysis of Adaptive Heat Shock Response of Streptococcus thermophilus

(2011) Jin-song Li et al.   PLoS One

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

Analysis of heat-induced changes in protein expression of Stenotrophomonas maltophilia K279a reveals a role for GroEL in the host-temperature adaptation

(2010) Elena De Carolis et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT

(2010) Magnus Ø. Arntzen et al.   JOURNAL OF PROTEOME RESEARCH

Discrimination of thermophilic and mesophilic proteins

(2010) Todd J Taylor et al.   BMC STRUCTURAL BIOLOGY

Dual-Pressure Linear Ion Trap Mass Spectrometer Improving the Analysis of Complex Protein Mixtures

(2009) Tonya Pekar Second et al.   ANALYTICAL CHEMISTRY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Correlations between RNA and protein expression profiles in 23 human cell lines

(2009) Marcus Gry et al.   BMC GENOMICS

iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”

(2009) Saw Yen Ow et al.   JOURNAL OF PROTEOME RESEARCH

Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags

(2009) Loïc Dayon et al.   Journal of Proteomics

Insertional Inactivation of Branched-Chain  -Keto Acid Dehydrogenase in Staphylococcus aureus Leads to Decreased Branched-Chain Membrane Fatty Acid Content and Increased Susceptibility to Certain Stresses

(2008) V. K. Singh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of Proline Substitutions on Stability and Kinetic Properties of a Cold Adapted Subtilase

(2008) J. Arnorsdottir et al.   JOURNAL OF BIOCHEMISTRY

Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile

(2008) Sunia A. Trauger et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE

DOOR: a database for prokaryotic operons

(2008) Fenglou Mao et al.   NUCLEIC ACIDS RESEARCH