De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging

Global gene expression responses to waterlogging in leaves of rape seedlings

(2014) Yong-Hwa Lee et al.   PLANT CELL REPORTS

De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa

(2013) Tao Pang et al.   BMC GENOMICS

Analysis of the Alfalfa Root Transcriptome in Response to Salinity Stress

(2013) Olga A. Postnikova et al.   PLANT AND CELL PHYSIOLOGY

Root Transcript Profiling of Two Rorippa Species Reveals Gene Clusters Associated with Extreme Submergence Tolerance

(2013) R. Sasidharan et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation

(2013) Jianjian Lv et al.   PLoS One

How unique is the low oxygen response? An analysis of the anaerobic response during germination and comparison with abiotic stress in rice and Arabidopsis

(2013) Reena Narsai et al.   Frontiers in Plant Science

Global gene expression responses to waterlogging in roots of sesame (Sesamum indicum L.)

(2012) Linhai Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

Identification of differentially expressed genes in cucumber (Cucumis sativus L.) root under waterlogging stress by digital gene expression profile

(2012) Xiao-Hua Qi et al.   GENOMICS

Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings

(2012) Lihong Zhai et al.   PHYSIOLOGIA PLANTARUM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Gene expression profiling of Sinapis alba leaves under drought stress and rewatering growth conditions with Illumina deep sequencing

(2011) Cai-Hua Dong et al.   MOLECULAR BIOLOGY REPORTS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

(2011) Reena Narsai et al.   NEW PHYTOLOGIST

Contrasting growth and adaptive responses of two oak species to flooding stress: role of non-symbiotic haemoglobin

(2011) CLAIRE PARENT et al.   PLANT CELL AND ENVIRONMENT

Insights into Hypoxic Systemic Responses Based on Analyses of Transcriptional Regulation in Arabidopsis

(2011) Fu-Chiun Hsu et al.   PLoS One

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

Effects of waterlogging on seed germination of three Mediterranean oak species: Ecological implications

(2009) Ignacio M. Pérez-Ramos et al.   ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Global Gene Expression Responses to Waterlogging in Roots and Leaves of Cotton (Gossypium hirsutum L.)

(2009) Jed A. Christianson et al.   PLANT AND CELL PHYSIOLOGY

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology

Alterations in photosynthesis and antioxidant enzyme activity in winter wheat subjected to post-anthesis water-logging

(2008) W. Tan et al.   PHOTOSYNTHETICA

Antioxidant enzymatic activity is linked to waterlogging stress tolerance in citrus

(2008) Vicent Arbona et al.   PHYSIOLOGIA PLANTARUM

Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia

(2008) J. Kreuzwieser et al.   PLANT PHYSIOLOGY