Comparative Transcriptome Analysis of Male and Female Conelets and Development of Microsatellite Markers in Pinus bungeana, an Endemic Conifer in China

Gain-of-Function Mutants of the Cytokinin Receptors AHK2 and AHK3 Regulate Plant Organ Size, Flowering Time and Plant Longevity

(2017) Isabel Bartrina et al.   PLANT PHYSIOLOGY

Ethylene Role in Plant Growth, Development and Senescence: Interaction with Other Phytohormones

(2017) Noushina Iqbal et al.   Frontiers in Plant Science

Nucleotide polymorphism and phylogeographic history of an endangered conifer species Pinus bungeana

(2016) Yi-Xin Yang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Revisiting the phosphatidylethanolamine-binding protein (PEBP) gene family reveals crypticFLOWERING LOCUS Tgene homologs in gymnosperms and sheds new light on functional evolution

(2016) Yan-Yan Liu et al.   NEW PHYTOLOGIST

Moderate Genetic Diversity and Genetic Differentiation in the Relict Tree Liquidambar formosana Hance Revealed by Genic Simple Sequence Repeat Markers

(2016) Rongxi Sun et al.   Frontiers in Plant Science

De Novo Transcriptome Sequencing Analysis of cDNA Library and Large-Scale Unigene Assembly in Japanese Red Pine (Pinus densiflora)

(2015) Le Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular phylogenetics and evolutionary history of sect. Quinquefoliae (Pinus): Implications for Northern Hemisphere biogeography

(2015) Zhen-Zhen Hao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Development and Characterization of Polymorphic Genic-SSR Markers in Larix kaempferi

(2015) Xing-Bin Chen et al.   MOLECULES

A transcriptomics investigation into pine reproductive organ development

(2015) Shihui Niu et al.   NEW PHYTOLOGIST

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis)

(2015) Alex Harkess et al.   NEW PHYTOLOGIST

Assembly: a resource for assembled genomes at NCBI

(2015) Paul A. Kitts et al.   NUCLEIC ACIDS RESEARCH

Sex-Biased Temporal Gene Expression in Male and Female Floral Buds of Seabuckthorn (Hippophae rhamnoides)

(2015) Aseem Chawla et al.   PLoS One

Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato

(2014) Ning Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterisation and development of EST-SSR markers in tree peony using transcriptome sequences

(2014) Jing Wu et al.   MOLECULAR BREEDING

Mitochondrial DNA capture and divergence in Pinus provide new insights into the evolution of the genus

(2014) Baosheng Wang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis

(2014) Carolina Gallego-Giraldo et al.   PLANT JOURNAL

Comparative transcriptomic analysis of male and female flowers of monoecious Quercus suber

(2014) Margarida Rocheta et al.   Frontiers in Plant Science

Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)

(2013) Lu Zhang et al.   BMC GENOMICS

Specification of floral organs in Arabidopsis

(2013) Frank Wellmer et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Transcriptome Analysis of the Differentially Expressed Genes in the Male and Female Shrub Willows (Salix suchowensis)

(2013) Jingjing Liu et al.   PLoS One

Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

(2012) Jun Chen et al.   BMC GENOMICS

The pathway of auxin biosynthesis in plants

(2012) Y. Mano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Demography and speciation history of the homoploid hybrid pinePinus densataon the Tibetan Plateau

(2012) JIE GAO et al.   MOLECULAR ECOLOGY

MYC2: The Master in Action

(2012) Kemal Kazan et al.   Molecular Plant

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development

(2012) B. Peret et al.   PLANT CELL

ArabidopsisPYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid

(2012) Miguel Gonzalez-Guzman et al.   PLANT CELL

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Colonization of the Tibetan Plateau by the homoploid hybrid pine Pinus densata

(2011) BAOSHENG WANG et al.   MOLECULAR ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Jasmonate-ZIM Domain Proteins Interact with the R2R3-MYB Transcription Factors MYB21 and MYB24 to Affect Jasmonate-Regulated Stamen Development in Arabidopsis

(2011) S. Song et al.   PLANT CELL

Multiple developmental processes underlie sex differentiation in angiosperms

(2011) Pamela K. Diggle et al.   TRENDS IN GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

(2010) Shaogui Guo et al.   BMC GENOMICS

Transcriptome profile analysis of floral sex determination in cucumber

(2010) Tao Wu et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Over-expression of F5H in COMT-deficient Arabidopsis leads to enrichment of an unusual lignin and disruption of pollen wall formation

(2010) Jing-Ke Weng et al.   PLANT JOURNAL

Arabidopsis lox3 lox4 double mutants are male sterile and defective in global proliferative arrest

(2010) Daniela Caldelari et al.   PLANT MOLECULAR BIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

A Critical Role for the TIFY Motif in Repression of Jasmonate Signaling by a Stabilized Splice Variant of the JASMONATE ZIM-Domain Protein JAZ10 in Arabidopsis

(2009) H. S. Chung et al.   PLANT CELL

Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins

(2009) S.-Y. Park et al.   SCIENCE

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

(2008) Michel Schneider et al.   Journal of Proteomics

Release of the Repressive Activity of Rice DELLA Protein SLR1 by Gibberellin Does Not Require SLR1 Degradation in the gid2 Mutant

(2008) M. Ueguchi-Tanaka et al.   PLANT CELL

A Conserved Mutation in an Ethylene Biosynthesis Enzyme Leads to Andromonoecy in Melons

(2008) A. Boualem et al.   SCIENCE