The microbiome of pest insects: it is not just bacteria

Host, Symbionts, and the Microbiome: The Missing Tripartite Interaction

(2019) Pina Brinker et al.   TRENDS IN MICROBIOLOGY

Estimating costs of aphid resistance to parasitoids conferred by a protective strain of the bacterial endosymbiont Regiella insecticola

(2019) Anine R. Jamin et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence

(2018) Miao Wang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment

(2018) Itai Opatovsky et al.   BMC GENOMICS

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Viral infection induces different detoxification enzyme activities in insecticide-resistant and -susceptible brown planthopper Nilaparvata lugens strains

(2018) Kai Yoshikawa et al.   JOURNAL OF PESTICIDE SCIENCE

Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitata

(2018) Antonino Malacrinò et al.   PLoS One

The ecology of the Drosophila-yeast mutualism in wineries

(2018) Allison S. Quan et al.   PLoS One

Bacterial communities in soil become sensitive to drought under intensive grazing

(2018) Stephanie D. Jurburg et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

The ‘Neglected’ Soil Virome – Potential Role and Impact

(2018) Akbar Adjie Pratama et al.   TRENDS IN MICROBIOLOGY

Yeast-insect associations: It takes guts

(2018) Irene Stefanini   YEAST

Metagenomic Virome Analysis of Culex Mosquitoes from Kenya and China

(2018) Evans Atoni et al.   Viruses-Basel

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

(2018) Ricardo J. Eloy Alves et al.   Nature Communications

Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)

(2018) José A. Siles et al.   Scientific Reports

Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae)

(2018) Waleed S. Mohammed et al.   Scientific Reports

Dispersal-competition tradeoff in microbiomes in the quest for land colonization

(2018) Francisco Dini-Andreote et al.   Scientific Reports

Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont

(2018) Deborah C. A. Leite et al.   Ecology and Evolution

Fungal, Bacterial, and Archaeal Diversity in the Digestive Tract of Several Beetle Larvae (Coleoptera)

(2018) Elvira E. Ziganshina et al.   Biomed Research International

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution

(2018) Deborah C. A. Leite et al.   Frontiers in Microbiology

Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

(2018) Ania T. Deutscher et al.   Microbiome

The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species

(2018) Melhem Bilen et al.   Microbiome

What Is the Role of Archaea in Plants? New Insights from the Vegetation of Alpine Bogs

(2018) Julian Taffner et al.   mSphere

The Cost of Metabolic Interactions in Symbioses between Insects and Bacteria with Reduced Genomes

(2018) Nana Y. D. Ankrah et al.   mBio

Insect-specific viruses: from discovery to potential translational applications

(2018) Shahideh Nouri et al.   Current Opinion in Virology

Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors

(2018) Priscila Bascuñán et al.   Microbiome

Finer-Scale Phylosymbiosis: Insights from Insect Viromes

(2018) Brittany A. Leigh et al.   mSystems

Review of the role of gut microbiota in mass rearing of the olive fruit fly, Bactrocera oleae , and its parasitoids

(2017) Erica Ras et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Benefits and potential trade-offs associated with yeast-like symbionts during virulence adaptation in a phloem-feeding planthopper

(2017) Finbarr G. Horgan et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Roles for Intestinal Bacteria, Viruses, and Fungi in Pathogenesis of Inflammatory Bowel Diseases and Therapeutic Approaches

(2017) R. Balfour Sartor et al.   GASTROENTEROLOGY

The evolutionary development of plant-feeding insects and their nutritional endosymbionts

(2017) Isabel H. Skidmore et al.   Insect Science

New Insights into the Microbiota of Moth Pests

(2017) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cooperative Metabolism in a Three-Partner Insect-Bacterial Symbiosis Revealed by Metabolic Modeling

(2017) Nana Y. D. Ankrah et al.   JOURNAL OF BACTERIOLOGY

Two Gut-Associated Yeasts in a Tephritid Fruit Fly have Contrasting Effects on Adult Attraction and Larval Survival

(2017) Alexander M. Piper et al.   JOURNAL OF CHEMICAL ECOLOGY

Microbiome symbionts and diet diversity incur costs on the immune system of insect larvae

(2017) Indrikis A. Krams et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Defensive repertoire of Drosophila larvae in response to toxic fungi

(2017) Monika Trienens et al.   MOLECULAR ECOLOGY

Caterpillars lack a resident gut microbiome

(2017) Tobin J. Hammer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity shift determined by different diets in the gut of the spotted wing flyDrosophila suzukiiis primarily reflected on acetic acid bacteria

(2017) Violetta Vacchini et al.   Environmental Microbiology Reports

Symbionts protect aphids from parasitic wasps by attenuating herbivore-induced plant volatiles

(2017) Enric Frago et al.   Nature Communications

Covert Infection of Insects by Baculoviruses

(2017) Trevor Williams et al.   Frontiers in Microbiology

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

(2017) H. Pieter J. van Veelen et al.   Microbiome

A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production

(2017) Ilaria Varotto Boccazzi et al.   PLoS One

Cell fusing agent virus and dengue virus mutually interact in Aedes aegypti cell lines

(2017) Guangmei Zhang et al.   Scientific Reports

Revealing the gut bacteriome of Dendroctonus bark beetles (Curculionidae: Scolytinae): diversity, core members and co-evolutionary patterns

(2017) Juan Alfredo Hernández-García et al.   Scientific Reports

Quorum sensing signal–response systems in Gram-negative bacteria

(2016) Kai Papenfort et al.   NATURE REVIEWS MICROBIOLOGY

The insect-specific Palm Creek virus modulates West Nile virus infection in and transmission by Australian mosquitoes

(2016) Sonja Hall-Mendelin et al.   Parasites & Vectors

The Significance of Mutualistic Phages for Bacterial Ecology and Evolution

(2016) Nancy Obeng et al.   TRENDS IN MICROBIOLOGY

Exploiting Intimate Relationships: Controlling Mosquito-Transmitted Disease with Wolbachia

(2016) Eric P. Caragata et al.   TRENDS IN PARASITOLOGY

Plant Virus–Insect Vector Interactions: Current and Potential Future Research Directions

(2016) Ralf Dietzgen et al.   Viruses-Basel

Metabarcoding of fungal communities associated with bark beetles

(2016) Kirsten E. Miller et al.   Ecology and Evolution

The virome: a missing component of biological interaction networks in health and disease

(2016) Scott A. Handley   Genome Medicine

Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes

(2016) Jacquelynn Benjamino et al.   Frontiers in Microbiology

Bacterial Communities Differ among Drosophila melanogaster Populations and Affect Host Resistance against Parasitoids

(2016) Mariia Chaplinska et al.   PLoS One

Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis

(2016) Fangyuan Zhou et al.   Scientific Reports

Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta

(2016) Xiaofei Lv et al.   Scientific Reports

Resource pulses can alleviate the biodiversity–invasion relationship in soil microbial communities

(2015) Cyrus A. Mallon et al.   ECOLOGY

Diverse Array of New Viral Sequences Identified in Worldwide Populations of the Asian Citrus Psyllid (Diaphorina citri) Using Viral Metagenomics

(2015) Shahideh Nouri et al.   JOURNAL OF VIROLOGY

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

Polydnaviruses: From discovery to current insights

(2015) Michael R. Strand et al.   VIROLOGY

Insect vector-mediated transmission of plant viruses

(2015) Anna E. Whitfield et al.   VIROLOGY

The Impact of Wolbachia on Virus Infection in Mosquitoes

(2015) Karyn Johnson   Viruses-Basel

Surveying the endomicrobiome and ectomicrobiome of bark beetles: The case of Dendroctonus simplex

(2015) Audrey-Anne Durand et al.   Scientific Reports

Community structure of gut fungi during different developmental stages of the Chinese white pine beetle (Dendroctonus armandi)

(2015) Xia Hu et al.   Scientific Reports

Manipulation of the Quorum Sensing Signal AI-2 Affects the Antibiotic-Treated Gut Microbiota

(2015) Jessica Ann Thompson et al.   Cell Reports

Fungi That Infect Insects: Altering Host Behavior and Beyond

(2015) Yanfang Shang et al.   PLoS Pathogens

The lung mycobiome: an emerging field of the human respiratory microbiome

(2015) Linh D. N. Nguyen et al.   Frontiers in Microbiology

The human gut virome: a multifaceted majority

(2015) Lesley A. Ogilvie et al.   Frontiers in Microbiology

Symbiotic bacteria enable olive fly larvae to overcome host defences

(2015) Michael Ben-Yosef et al.   Royal Society Open Science

Bacterial Communities Associated with Host-Adapted Populations of Pea Aphids Revealed by Deep Sequencing of 16S Ribosomal DNA

(2015) Jean-Pierre Gauthier et al.   PLoS One

Metagenomic Profile of the Viral Communities in Rhipicephalus spp. Ticks from Yunnan, China

(2015) Han Xia et al.   PLoS One

Baculovirus infection triggers a positive phototactic response in caterpillars to induce 'tree-top' disease

(2014) S. van Houte et al.   Biology Letters

Arsenophonusinsect symbionts are commonly infected with APSE, a bacteriophage involved in protective symbiosis

(2014) Olivier Duron   FEMS MICROBIOLOGY ECOLOGY

Evaluation of five antibiotics on larval gut bacterial diversity ofPlutella xylostella(Lepidoptera: Plutellidae)

(2014) Xiao-Li Lin et al.   Insect Science

Symbiotic bacteria enable olive flies (Bactrocera oleae) to exploit intractable sources of nitrogen

(2014) M. Ben-Yosef et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The Ecology of Yeasts in the Bark Beetle Holobiont: A Century of Research Revisited

(2014) Thomas Seth Davis   MICROBIAL ECOLOGY

Anterior Foregut Microbiota of the Glassy-Winged Sharpshooter Explored Using Deep 16S rRNA Gene Sequencing from Individual Insects

(2014) Elizabeth E. Rogers et al.   PLoS One

Methane Production and Methanogenic Archaea in the Digestive Tracts of Millipedes (Diplopoda)

(2014) Vladimír Šustr et al.   PLoS One

Evolutionary origin of insect-Wolbachia nutritional mutualism

(2014) N. Nikoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Harnessing mosquito–Wolbachia symbiosis for vector and disease control

(2013) Kostas Bourtzis et al.   ACTA TROPICA

Symbiont-mediated adaptation by planthoppers and leafhoppers to resistant rice varieties

(2013) Jedeliza B. Ferrater et al.   Arthropod-Plant Interactions

Seasonal changes in microbial community structure and activity imply winter production is linked to summer hypoxia in a large lake

(2013) Steven W. Wilhelm et al.   FEMS MICROBIOLOGY ECOLOGY

Defensive symbiosis in the real world - advancing ecological studies of heritable, protective bacteria in aphids and beyond

(2013) Kerry M. Oliver et al.   FUNCTIONAL ECOLOGY

Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect

(2013) Gordon M. Bennett et al.   Genome Biology and Evolution

Differences in the Structure of the Gut Bacteria Communities in Development Stages of the Chinese White Pine Beetle (Dendroctonus armandi)

(2013) Xia Hu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Understanding the Wolbachia-mediated inhibition of arboviruses in mosquitoes: progress and challenges

(2013) S. M. Rainey et al.   JOURNAL OF GENERAL VIROLOGY

When parasitic wasps hijacked viruses: genomic and functional evolution of polydnaviruses

(2013) E. A. Herniou et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A New Insect-Specific Flavivirus from Northern Australia Suppresses Replication of West Nile Virus and Murray Valley Encephalitis Virus in Co-infected Mosquito Cells

(2013) Jody Hobson-Peters et al.   PLoS One

Larval Defense against Attack from Parasitoid Wasps Requires Nociceptive Neurons

(2013) Jessica L. Robertson et al.   PLoS One

Bugs in Transition: The Dynamic World of Wolbachia in Insects

(2013) Wolfgang J. Miller   PLoS Genetics

Microbial Inoculants and Their Impact on Soil Microbial Communities: A Review

(2013) Darine Trabelsi et al.   Biomed Research International

Characterization of the Bacterial Community Associated with Larvae and Adults ofAnoplophora chinensisCollected in Italy by Culture and Culture-Independent Methods

(2013) Aurora Rizzi et al.   Biomed Research International

Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in the Same Hosts

(2012) James Angus Chandler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Description of an early Cretaceous termite (Isoptera: Kalotermitidae) and its associated intestinal protozoa, with comments on their co-evolution

(2012) George O Poinar   Parasites & Vectors

Protein Tyrosine Phosphatase-Induced Hyperactivity Is a Conserved Strategy of a Subset of BaculoViruses to Manipulate Lepidopteran Host Behavior

(2012) Stineke van Houte et al.   PLoS One

Bacterial symbionts as mediators of ecologically important traits of insect hosts

(2011) HEIKE FELDHAAR   ECOLOGICAL ENTOMOLOGY

Culture Independent Survey of the Microbiota of the Glassy-Winged Sharpshooter (Homalodisca vitripennis) Using 454 Pyrosequencing

(2011) Daymon Hail et al.   ENVIRONMENTAL ENTOMOLOGY

Temperature Affects the Tripartite Interactions between Bacteriophage WO, Wolbachia, and Cytoplasmic Incompatibility

(2011) Sarah R. Bordenstein et al.   PLoS One

Next Generation Sequencing Technologies for Insect Virus Discovery

(2011) Sijun Liu et al.   Viruses-Basel

The Role of Phytopathogenicity in Bark Beetle–Fungus Symbioses: A Challenge to the Classic Paradigm

(2010) Diana L. Six et al.   Annual Review of Entomology

Survival strategies of a sterol auxotroph

(2010) M. Carvalho et al.   DEVELOPMENT

Symbiosis in Subterranean Termites: A Review of Insights From Molecular Studies

(2010) Claudia Husseneder   ENVIRONMENTAL ENTOMOLOGY

Yeasts in the Sugiyamaella clade associated with wood-ingesting beetles and the proposal of Candida bullrunensis sp. nov.

(2010) J. L. Houseknecht et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Spiroplasma Bacteria Enhance Survival of Drosophila hydei Attacked by the Parasitic Wasp Leptopilina heterotoma

(2010) Jialei Xie et al.   PLoS One

Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont

(2010) J. Jaenike et al.   SCIENCE

The Endosymbiotic Bacterium Wolbachia Induces Resistance to Dengue Virus in Aedes aegypti

(2010) Guowu Bian et al.   PLoS Pathogens

A Wolbachia Symbiont in Aedes aegypti Limits Infection with Dengue, Chikungunya, and Plasmodium

(2009) Luciano A. Moreira et al.   CELL

EVOLUTION AND MANIPULATION OF PARASITOID EGG LOAD

(2009) Sylvain Gandon et al.   EVOLUTION

Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors

(2009) P. H. Degnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophages Encode Factors Required for Protection in a Symbiotic Mutualism

(2009) K. M. Oliver et al.   SCIENCE

Diverse Phage-Encoded Toxins in a Protective Insect Endosymbiont

(2008) P. H. Degnan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PHYTOPHAGOUS INSECT–MICROBE MUTUALISMS AND ADAPTIVE EVOLUTIONARY DIVERSIFICATION

(2008) Eric M. Janson et al.   EVOLUTION

Gut bacterial communities in the Mediterranean fruit fly (Ceratitis capitata) and their impact on host longevity

(2008) A. Behar et al.   JOURNAL OF INSECT PHYSIOLOGY

Wolbachia: master manipulators of invertebrate biology

(2008) John H. Werren et al.   NATURE REVIEWS MICROBIOLOGY

Wolbachia and Virus Protection in Insects

(2008) L. M. Hedges et al.   SCIENCE

Symbioses of flagellates and prokaryotes in the gut of lower termites

(2008) Moriya Ohkuma   TRENDS IN MICROBIOLOGY

Yeasts isolated from plant-associated beetles and other insects: seven novelCandidaspecies nearCandida albicans

(2007) Sung-Oui Suh et al.   FEMS YEAST RESEARCH