Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence

Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem

(2016) Francisco Dini-Andreote et al.   Frontiers in Microbiology

Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession

(2016) Miao Wang et al.   Frontiers in Plant Science

Short-term response of nitrifier communities and potential nitrification activity to elevated CO2 and temperature interaction in a Chinese paddy field

(2015) Yuan Liu et al.   APPLIED SOIL ECOLOGY

Nutrients, microbial community structure and functional gene abundance of rhizosphere and bulk soils of halophytes

(2015) Doongar R. Chaudhary et al.   APPLIED SOIL ECOLOGY

Plant genotype and nitrogen fertilization effects on abundance and diversity of diazotrophic bacteria associated with maize (Zea mays L.)

(2015) Andrea Rodríguez-Blanco et al.   BIOLOGY AND FERTILITY OF SOILS

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia-oxidising bacteria not archaea dominate nitrification activity in semi-arid agricultural soil

(2015) Natasha C. Banning et al.   Scientific Reports

amoAGene Abundances and Nitrification Potential Rates Suggest that Benthic Ammonia-Oxidizing Bacteria and Not Archaea Dominate N Cycling in the Colne Estuary, United Kingdom

(2014) Jialin Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abundance and Activity of 16S rRNA,AmoAandNifHBacterial Genes During Assisted Phytostabilization of Mine Tailings

(2014) Karis N. Nelson et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

(2014) Francisco Dini-Andreote et al.   ISME Journal

Functional Potential of Soil Microbial Communities in the Maize Rhizosphere

(2014) Xiangzhen Li et al.   PLoS One

Rhizosphere Effect on Nutrient Availability in Soil and Its Uptake by Plants: A Review

(2014) M. L. Dotaniya et al.   Proceedings of the National Academy of Sciences, India. Section B

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey

(2013) Huaiying Yao et al.   ENVIRONMENTAL MICROBIOLOGY

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Diazotroph community structure and abundance in wheat–fallow and wheat–pea crop rotations

(2013) C.L. Reardon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecosystem assembly rules: the interplay of green and brown webs during salt marsh succession

(2012) Maarten Schrama et al.   ECOLOGY

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil

(2012) Yuejian Mao et al.   ENVIRONMENTAL MICROBIOLOGY

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Potato cultivar type affects the structure of ammonia oxidizer communities in field soil under potato beyond the rhizosphere

(2012) Armando Cavalcante Franco Dias et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbe-mediated processes as indicators to establish the normal operating range of soil functioning

(2012) Michele C. Pereira e Silva et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Changes in Diversity and Functional Gene Abundances of Microbial Communities Involved in Nitrogen Fixation, Nitrification, and Denitrification in a Tidal Wetland versus Paddy Soils Cultivated for Different Time Periods

(2011) Andrea Bannert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal variations in the diversity and abundance of diazotrophic communities across soils

(2011) Michele C. Pereira e Silva et al.   FEMS MICROBIOLOGY ECOLOGY

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Long-term nitrogen and phosphorus fertilization effects on N2 fixation rates and nifH gene community patterns in mangrove sediments

(2011) Isabel C. Romero et al.   Marine Ecology-An Evolutionary Perspective

Genetic Diversity of Endophytic Diazotrophs of the Wild Rice, Oryza alta and Identification of the New Diazotroph, Acinetobacter oryzae sp. nov.

(2011) Hassan Javed Chaudhary et al.   MICROBIAL ECOLOGY

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

(2011) L. E. Lehtovirta-Morley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils

(2011) Jaejoon Jung et al.   RESEARCH IN MICROBIOLOGY

Diazotrophic diversity in the rhizosphere of two exotic weed plants, Prosopis juliflora and Parthenium hysterophorus

(2011) B. Cibichakravarthy et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Effect of DNA Extraction Method on the Apparent Microbial Diversity of Soil

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of Nitrogen Reductase and Nitrite Reductase Genes in Soil of Thinned and Clear-Cut Douglas-Fir Stands by Using Real-Time PCR

(2010) D. J. Levy-Booth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial Variability in Nitrification Rates and Ammonia-Oxidizing Microbial Communities in the Agriculturally Impacted Elkhorn Slough Estuary, California

(2010) Scott D. Wankel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment

(2010) Katrin Glaser et al.   FEMS MICROBIOLOGY ECOLOGY

Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions

(2010) Hong J. Di et al.   FEMS MICROBIOLOGY ECOLOGY

Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield

(2010) Robert Brankatschk et al.   ISME Journal

Regional and local factors affecting diversity, abundance and activity of free-living, N2-fixing bacteria in Australian agricultural soils

(2010) S.A. Wakelin et al.   PEDOBIOLOGIA

Protection of free-living nitrogen-fixing bacteria within the soil matrix

(2010) V.V.S.R. Gupta et al.   SOIL & TILLAGE RESEARCH

The abundance of nitrogen cycle genes amoA and nifH depends on land-uses and soil types in South-Eastern Australia

(2010) Helen L. Hayden et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking plant identity and interspecific competition to soil nitrogen cycling through ammonia oxidizer communities

(2010) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Quantification of Key Genes Steering the Microbial Nitrogen Cycle in the Rhizosphere of Sorghum Cultivars in Tropical Agroecosystems

(2009) B. Hai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of upwelling on short-term variability in microbial and biogeochemical processes in estuarine sediments from Elkhorn Slough, California, USA

(2009) JM Caffrey et al.   AQUATIC MICROBIAL ECOLOGY

Characterization of plant-growth promoting diazotrophic bacteria isolated from field grown Chinese cabbage under different fertilization conditions

(2009) Woo-Jong Yim et al.   JOURNAL OF MICROBIOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Roots, Nitrogen Transformations, and Ecosystem Services

(2008) Louise E. Jackson et al.   Annual Review of Plant Biology

Variation in the active diazotrophic community in rice paddy—nifH PCR-DGGE analysis of rhizosphere and bulk soil

(2008) Ingvild Wartiainen et al.   APPLIED SOIL ECOLOGY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary

(2008) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils

(2008) Jennifer K M Walker et al.   ISME Journal

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal

Biochemical cycling in the rhizosphere having an impact on global change

(2008) L. Philippot et al.   PLANT AND SOIL

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY