Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies

(2017) Emily L Pascoe et al.   ISME Journal

Codiversification of gastrointestinal microbiota and phylogeny in passerines is not explained by ecological divergence

(2017) Lucie Kropáčková et al.   MOLECULAR ECOLOGY

Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird

(2017) Jakub Kreisinger et al.   Frontiers in Microbiology

Evolutionary Biology Needs Wild Microbiomes

(2017) Sarah M. Hird   Frontiers in Microbiology

Feather-degrading bacilli in the plumage of wild birds: Prevalence and relation to feather wear

(2016) Cody M. Kent et al.   AUK

Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities

(2016) Philipp Rausch et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Gut microbial ecology of lizards: insights into diversity in the wild, effects of captivity, variation across gut regions and transmission

(2016) Kevin D. Kohl et al.   MOLECULAR ECOLOGY

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

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(2016) Christoph A. Thaiss et al.   NATURE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Gut Microbiotas and Host Evolution: Scaling Up Symbiosis

(2016) Michael Shapira   TRENDS IN ECOLOGY & EVOLUTION

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

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Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts

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Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment

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Environment and host species shape the skin microbiome of captive neotropical bats

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Intraspecific Variation in Microbial Symbiont Communities of the Sun Sponge, Hymeniacidon heliophila, from Intertidal and Subtidal Habitats

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Fitting Linear Mixed-Effects Models Usinglme4

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Eco-Evo-Devo: developmental symbiosis and developmental plasticity as evolutionary agents

(2015) Scott F. Gilbert et al.   NATURE REVIEWS GENETICS

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species

(2015) Katherine R. Amato et al.   OECOLOGIA

Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing

(2015) Jakub Kreisinger et al.   PLoS One

Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

(2015) Gordon M. Bennett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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The Hologenome Concept: Helpful or Hollow?

(2015) Nancy A. Moran et al.   PLOS BIOLOGY

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Exploring the avian gut microbiota: current trends and future directions

(2015) David W. Waite et al.   Frontiers in Microbiology

Comparative Gut Microbiota of 59 Neotropical Bird Species

(2015) Sarah M. Hird et al.   Frontiers in Microbiology

Microbiota of the indoor environment: a meta-analysis

(2015) Rachel I. Adams et al.   Microbiome

Environmental Factors Shape the Community of Symbionts in the Hoopoe Uropygial Gland More than Genetic Factors

(2014) Magdalena Ruiz-Rodríguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intra- and Interindividual Variations Mask Interspecies Variation in the Microbiota of Sympatric Peromyscus Populations

(2014) Nielson T. Baxter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut

(2014) Henning Seedorf et al.   CELL

Longitudinal analysis of microbial interaction between humans and the indoor environment

(2014) S. Lax et al.   SCIENCE

Functional and phylogenetic assembly of microbial communities in the human microbiome

(2014) Afrah Shafquat et al.   TRENDS IN MICROBIOLOGY

The microbiome of New World vultures

(2014) Michael Roggenbuck et al.   Nature Communications

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

(2013) Kenneth Barfod et al.   BMC MICROBIOLOGY

Sympatric chimpanzees and gorillas harbor convergent gut microbial communities

(2013) A. H. Moeller et al.   GENOME RESEARCH

Bacterial colonization of Hydra hatchlings follows a robust temporal pattern

(2013) Sören Franzenburg et al.   ISME Journal

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

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(2013) Paul J. McMurdie et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park

(2012) P. H. Degnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

A general and simple method for obtainingR2from generalized linear mixed-effects models

(2012) Shinichi Nakagawa et al.   Methods in Ecology and Evolution

Can SkylarksAlauda arvensisDiscriminate a Parasite Nestling? Possible Case of Nestling CuckooCuculus canorusEjection by Its Host Parents

(2011) Arne Hegemann et al.   ARDEA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

(2009) Steven W. Kembel   ECOLOGY LETTERS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION