Multivariate Information Fusion With Fast Kernel Learning to Kernel Ridge Regression in Predicting LncRNA-Protein Interactions

Enhancing thermal tolerance of Aspergillus niger PhyA phytase directed by structural comparison and computational simulation

(2018) Nanyu Han et al.   BMC BIOTECHNOLOGY

Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey

(2018) Ali Ezzat et al.   BRIEFINGS IN BIOINFORMATICS

Self-Recognition of an Inducible Host lncRNA by RIG-I Feedback Restricts Innate Immune Response

(2018) Minghong Jiang et al.   CELL

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction

(2018) Qi Zhao et al.   Frontiers in Genetics

Identifying and Exploiting Potential miRNA-Disease Associations With Neighborhood Regularized Logistic Matrix Factorization

(2018) Bin-Sheng He et al.   Frontiers in Genetics

DNRLMF-MDA:Predicting microRNA-disease associations based on similarities of microRNAs and diseases

(2017) Cheng Yan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

An Ameliorated Prediction of Drug–Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features

(2017) Cong Shen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of Protein–Ligand Binding Sites by Sequence Information and Ensemble Classifier

(2017) Yijie Ding et al.   Journal of Chemical Information and Modeling

A novel method of predicting microRNA-disease associations based on microRNA, disease, gene and environment factor networks

(2017) Wei Peng et al.   METHODS

LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

(2017) Huan Hu et al.   Molecular BioSystems

Identification of DNA–protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information

(2017) Cong Shen et al.   MOLECULES

A multiple kernel learning algorithm for drug-target interaction prediction

(2016) André C. A. Nascimento et al.   BMC BIOINFORMATICS

An Empirical Study of Features Fusion Techniques for Protein-Protein Interaction Prediction

(2016) Jiancang Zeng et al.   Current Bioinformatics

Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction

(2016) Yong Liu et al.   PLoS Computational Biology

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

(2016) Mengqu Ge et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Computational approaches towards understanding human long non-coding RNA biology

(2015) Saakshi Jalali et al.   BIOINFORMATICS

Abstract 146: The long noncoding RNA MALAT1 promotes hypoxia-driven angiogenesis by upregulating pro-angiogenic gene expression in neuroblastoma cells

(2015) Andrew E. Tee et al.   CANCER RESEARCH

Exploring the Secrets of Long Noncoding RNAs

(2015) Mingyang Quan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information

(2015) V. Suresh et al.   NUCLEIC ACIDS RESEARCH

The Landscape of long noncoding RNA classification

(2015) Georges St. Laurent et al.   TRENDS IN GENETICS

Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

(2015) Ao Li et al.   Biomed Research International

Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods

(2015) Quan Zou et al.   Biomed Research International

lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs

(2014) Charny Park et al.   BIOINFORMATICS

Walking on a User Similarity Network towards Personalized Recommendations

(2014) Mingxin Gan   PLoS One

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

Computational Analysis of miRNA Target Identification

(2013) Leyi Wei et al.   Current Bioinformatics

Long Non-Coding RNAs and Complex Human Diseases

(2013) Jing Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition

(2013) Shibiao Wan et al.   JOURNAL OF THEORETICAL BIOLOGY

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

NONCODEv4: exploring the world of long non-coding RNA genes

(2013) Chaoyong Xie et al.   NUCLEIC ACIDS RESEARCH

Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile

(2013) Twan van Laarhoven et al.   PLoS One

Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method

(2013) Xiaomei Wu et al.   PLoS One

De novo prediction of RNA–protein interactions from sequence information

(2012) Ying Wang et al.   Molecular BioSystems

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

High-Throughput Sequencing to Reveal Genes Involved in Reproduction and Development in Bactrocera dorsalis (Diptera: Tephritidae)

(2012) Weiwei Zheng et al.   PLoS One

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

Support vector machine method on predicting resistance gene against Xanthomonas oryzae pv. oryzae in rice

(2010) Jingbo Xia et al.   EXPERT SYSTEMS WITH APPLICATIONS

Matrix Factorization Techniques for Recommender Systems

(2009) Yehuda Koren et al.   COMPUTER

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces

(2008) Y. Yamanishi et al.   BIOINFORMATICS