LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding

(2016) Yu-An Huang et al.   BMC BIOINFORMATICS

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions

(2016) Yajing Hao et al.   Database-The Journal of Biological Databases and Curation

ILNCSIM: improved lncRNA functional similarity calculation model

(2016) Yu-An Huang et al.   Oncotarget

FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model

(2016) Xing Chen et al.   Oncotarget

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

(2016) Mengqu Ge et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Long non-coding RNA APTR promotes the activation of hepatic stellate cells and the progression of liver fibrosis

(2015) Fujun Yu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information

(2015) V. Suresh et al.   NUCLEIC ACIDS RESEARCH

An eigenvalue transformation technique for predicting drug-target interaction

(2015) Qifan Kuang et al.   Scientific Reports

Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA

(2015) Xing Chen   Scientific Reports

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Walking on a User Similarity Network towards Personalized Recommendations

(2014) Mingxin Gan   PLoS One

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

A compendium of RNA-binding motifs for decoding gene regulation

(2013) Debashish Ray et al.   NATURE

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

NONCODEv4: exploring the world of long non-coding RNA genes

(2013) Chaoyong Xie et al.   NUCLEIC ACIDS RESEARCH

Small Molecule-Mediated Directed Differentiation of Human Embryonic Stem Cells Toward Ventricular Cardiomyocytes

(2013) Ioannis Karakikes et al.   Stem Cells Translational Medicine

De novo prediction of RNA–protein interactions from sequence information

(2012) Ying Wang et al.   Molecular BioSystems

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression

(2011) S. Kishore et al.   Briefings in Functional Genomics

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

RBPDB: a database of RNA-binding specificities

(2010) K. B. Cook et al.   NUCLEIC ACIDS RESEARCH

Long noncoding RNAs: functional surprises from the RNA world

(2009) J. E. Wilusz et al.   GENES & DEVELOPMENT

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks

(2009) N. Mittal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA