Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method

Measuring gene functional similarity based on group-wise comparison of GO terms

(2013) Z. Teng et al.   BIOINFORMATICS

Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty

(2012) Haixuan Yang et al.   BIOINFORMATICS

Quality of Computationally Inferred Gene Ontology Annotations

(2012) Nives Škunca et al.   PLoS Computational Biology

Revisiting the negative example sampling problem for predicting protein-protein interactions

(2011) Y. Park et al.   BIOINFORMATICS

Semantic similarity analysis of protein data: assessment with biological features and issues

(2011) P. H. Guzzi et al.   BRIEFINGS IN BIOINFORMATICS

Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals

(2011) Nathan L. Nehrt et al.   PLoS Computational Biology

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data

(2008) Tao Xu et al.   BMC BIOINFORMATICS

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Metrics for GO based protein semantic similarity: a systematic evaluation

(2008) Catia Pesquita et al.   BMC BIOINFORMATICS

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH