M6AMRFS: Robust Prediction of N6-Methyladenosine Sites With Sequence-Based Features in Multiple Species

ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides

(2018) Leyi Wei et al.   BIOINFORMATICS

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC

(2018) Zhen-Dong Su et al.   BIOINFORMATICS

iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites

(2018) Jiangning Song et al.   BRIEFINGS IN BIOINFORMATICS

Prediction of bacteriophage proteins located in the host cell using hybrid features

(2018) Jing-Hui Cheng et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Feature Extractions for Computationally Predicting Protein Post- Translational Modifications

(2018) Guohua Huang et al.   Current Bioinformatics

HBPred: a tool to identify growth hormone-binding proteins

(2018) Hua Tang et al.   International Journal of Biological Sciences

iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC

(2018) Hui Yang et al.   International Journal of Biological Sciences

Integration of deep feature representations and handcrafted features to improve the prediction of N 6 -methyladenosine sites

(2018) Leyi Wei et al.   NEUROCOMPUTING

RFAthM6A: a new tool for predicting m6A sites in Arabidopsis thaliana

(2018) Xiaofeng Wang et al.   PLANT MOLECULAR BIOLOGY

M6APred-EL: A sequence-based predictor for identifying N6-methyladenosine sites using ensemble learning

(2018) Leyi Wei et al.   Molecular Therapy-Nucleic Acids

Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species

(2018) Leyi Wei et al.   BIOINFORMATICS

Sequence clustering in bioinformatics: an empirical study

(2018) Quan Zou et al.   BRIEFINGS IN BIOINFORMATICS

Deep Forest-based Prediction of Protein Subcellular Localization

(2018) Lingling Zhao et al.   CURRENT GENE THERAPY

Prediction and Validation of Disease Genes Using HeteSim Scores

(2017) Xiangxiang Zeng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Fast prediction of protein methylation sites using a sequence-based feature selection technique

(2017) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information

(2017) Leyi Wei et al.   INFORMATION SCIENCES

CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake Efficiency

(2017) Leyi Wei et al.   JOURNAL OF PROTEOME RESEARCH

Sequence-based predictive modeling to identify cancerlectins

(2017) Hong-Yan Lai et al.   Oncotarget

A comprehensive overview and evaluation of circular RNA detection tools

(2017) Xiangxiang Zeng et al.   PLoS Computational Biology

Classification of Small GTPases with Hybrid Protein Features and Advanced Machine Learning Techniques

(2017) Zhijun Liao et al.   Current Bioinformatics

RNA-MethylPred: A high-accuracy predictor to identify N6-methyladenosine in RNA

(2016) Cang-Zhi Jia et al.   ANALYTICAL BIOCHEMISTRY

pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical–chemical properties

(2016) Zi Liu et al.   ANALYTICAL BIOCHEMISTRY

iRSpot-EL: identify recombination spots with an ensemble learning approach

(2016) Bin Liu et al.   BIOINFORMATICS

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework

(2016) Bin Liu et al.   BIOINFORMATICS

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy

(2016) Quan Zou et al.   BMC Systems Biology

An Empirical Study of Features Fusion Techniques for Protein-Protein Interaction Prediction

(2016) Jiancang Zeng et al.   Current Bioinformatics

MethyRNA: a web server for identification of N6-methyladenosine sites

(2016) Wei Chen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

AthMethPre: a web server for the prediction and query of mRNA m6A sites in Arabidopsis thaliana

(2016) Shunian Xiang et al.   Molecular BioSystems

Identifying N 6-methyladenosine sites in the Arabidopsis thaliana transcriptome

(2016) Wei Chen et al.   MOLECULAR GENETICS AND GENOMICS

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features

(2016) Yuan Zhou et al.   NUCLEIC ACIDS RESEARCH

RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites

(2016) Shunian Xiang et al.   PLoS One

GlycoMine struct : a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

(2016) Fuyi Li et al.   Scientific Reports

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks

(2015) Xiangxiang Zeng et al.   BRIEFINGS IN BIOINFORMATICS

m6A RNA Methylation Is Regulated by MicroRNAs and Promotes Reprogramming to Pluripotency

(2015) Tong Chen et al.   Cell Stem Cell

Structure and Thermodynamics of N6-Methyladenosine in RNA: A Spring-Loaded Base Modification

(2015) Caroline Roost et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

N6-methyladenosine marks primary microRNAs for processing

(2015) Claudio R. Alarcón et al.   NATURE

N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions

(2015) Nian Liu et al.   NATURE

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation

(2015) Shay Geula et al.   SCIENCE

Identification and analysis of the N6-methyladenosine in the Saccharomyces cerevisiae transcriptome

(2015) Wei Chen et al.   Scientific Reports

Cloud4Psi: cloud computing for 3D protein structure similarity searching

(2014) D. Mrozek et al.   BIOINFORMATICS

Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets

(2013) Mingjun Wang et al.   BIOINFORMATICS

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information

(2013) Dariusz Mrozek et al.   BMC BIOINFORMATICS

N6-methyladenosine-dependent regulation of messenger RNA stability

(2013) Xiao Wang et al.   NATURE

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons

(2012) Kate D. Meyer et al.   CELL

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

(2012) Dan Dominissini et al.   NATURE

PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites

(2012) Jiangning Song et al.   PLoS One

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

(2010) Jiangning Song et al.   BIOINFORMATICS