GlycoMine struct : a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

Recent structural and mechanistic insights into protein O-GalNAc glycosylation

(2016) R. Hurtado-Guerrero   BIOCHEMICAL SOCIETY TRANSACTIONS

Cracking the Glycome Encoder: Signaling, Trafficking, and Glycosylation

(2016) Frederic Bard et al.   TRENDS IN CELL BIOLOGY

Large-Scale Measurement of Absolute Protein Glycosylation Stoichiometry

(2015) Shisheng Sun et al.   ANALYTICAL CHEMISTRY

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

(2015) Fuyi Li et al.   BIOINFORMATICS

IBS: an illustrator for the presentation and visualization of biological sequences: Fig. 1.

(2015) Wenzhong Liu et al.   BIOINFORMATICS

Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast

(2015) Adnan Halim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic regulation of innate immune responses inDrosophilaby Senju-mediated glycosylation

(2015) Miki Yamamoto-Hino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polysialylation controls dendritic cell trafficking by regulating chemokine recognition

(2015) E. Kiermaier et al.   SCIENCE

Abnormal Protein Glycosylation and Activated PI3K/Akt/mTOR Pathway: Role in Bladder Cancer Prognosis and Targeted Therapeutics

(2015) Céu Costa et al.   PLoS One

Prediction of protein kinase-specific phosphorylation sites in hierarchical structure using functional information and random forest

(2014) Wenwen Fan et al.   AMINO ACIDS

Tertiary structure-based prediction of conformational B-cell epitopes through B factors

(2014) Jing Ren et al.   BIOINFORMATICS

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features

(2014) Zhen Chen et al.   BRIEFINGS IN BIOINFORMATICS

Structure-Based Design of Novel Human Toll-like Receptor 8 Agonists

(2014) Hari Prasad Kokatla et al.   ChemMedChem

High-Throughput Analysis and Automation for Glycomics Studies

(2014) Archana Shubhakar et al.   CHROMATOGRAPHIA

Pancreatic Cancer Cell Glycosylation Regulates Cell Adhesion and Invasion through the Modulation of α2β1 Integrin and E-Cadherin Function

(2014) Sònia Bassagañas et al.   PLoS One

Glycosylation of the Nuclear Pore

(2014) Bin Li et al.   TRAFFIC

Disruption of N-linked glycosylation promotes proteasomal degradation of the human ATP-binding cassette transporter ABCA3

(2013) Michael F. Beers et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

N-linked protein glycosylation in the ER

(2013) Markus Aebi   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Glycobiology of cell death: when glycans and lectins govern cell fate

(2013) R G Lichtenstein et al.   CELL DEATH AND DIFFERENTIATION

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

(2013) Catharina Steentoft et al.   EMBO JOURNAL

The role of protein glycosylation in Alzheimer disease

(2013) Sophia Schedin-Weiss et al.   FEBS Journal

Insights into mucopolysaccharidosis I from the structure and action of α-L-iduronidase

(2013) Haiying Bie et al.   Nature Chemical Biology

Adaptive immune activation: glycosylation does matter

(2013) Margreet A Wolfert et al.   Nature Chemical Biology

pLogo: a probabilistic approach to visualizing sequence motifs

(2013) Joseph P O'Shea et al.   NATURE METHODS

The Role of N-Glycosylation in Folding, Trafficking, and Functionality of Lysosomal Protein CLN5

(2013) Akshay Moharir et al.   PLoS One

Human α-l-iduronidase uses its ownN-glycan as a substrate-binding and catalytic module

(2013) Nobuo Maita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Reorganization of the Toll-Like Receptor 8 Dimer Induced by Agonistic Ligands

(2013) H. Tanji et al.   SCIENCE

Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes

(2013) Phuc Vinh Nguyen Lam et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Glycosylation at Asn91of H1N1 haemagglutinin affects binding to glycan receptors

(2012) Akila Jayaraman et al.   BIOCHEMICAL JOURNAL

Computational prediction of N-linked glycosylation incorporating structural properties and patterns

(2012) Gwo-Yu Chuang et al.   BIOINFORMATICS

Vertebrate protein glycosylation: diversity, synthesis and function

(2012) Kelley W. Moremen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Proteome-Wide Analysis of Single-Nucleotide Variations in the N-Glycosylation Sequon of Human Genes

(2012) Raja Mazumder et al.   PLoS One

FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest Model

(2012) Mingjun Wang et al.   PLoS One

Prediction of Protein Cleavage Site with Feature Selection by Random Forest

(2012) Bi-Qing Li et al.   PLoS One

Detection and Verification of Glycosylation Patterns of Glycoproteins from Clinical Specimens Using Lectin Microarrays and Lectin-Based Immunosorbent Assays

(2011) Yan Li et al.   ANALYTICAL CHEMISTRY

Cross Talk Between O-GlcNAcylation and Phosphorylation: Roles in Signaling, Transcription, and Chronic Disease

(2011) Gerald W. Hart et al.   Annual Review of Biochemistry

Glycosylation Affects Ligand Binding and Function of the Activating Natural Killer Cell Receptor 2B4 (CD244) Protein

(2011) Stefanie Margraf-Schönfeld et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How Hydrophobicity and the Glycosylation Site of Glycans Affect Protein Folding and Stability: A Molecular Dynamics Simulation

(2011) Diannan Lu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A large-scale method to measure absolute protein phosphorylation stoichiometries

(2011) Ronghu Wu et al.   NATURE METHODS

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Review of Fleiss, statistical methods for rates and proportions

(2011) Stephen Senn   Research Synthesis Methods

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information

(2010) Ashis Biswas et al.   BMC BIOINFORMATICS

Regulation ofO-glycosylation through Golgi-to-ER relocation of initiation enzymes

(2010) David J. Gill et al.   JOURNAL OF CELL BIOLOGY

A systematic approach to protein glycosylation analysis: a path through the maze

(2010) Karina Mariño et al.   Nature Chemical Biology

Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags

(2010) Jessica E Rexach et al.   Nature Chemical Biology

A series of PDB related databases for everyday needs

(2010) R. P. Joosten et al.   NUCLEIC ACIDS RESEARCH

From protein sequences to 3D-structures and beyond: the example of the UniProt Knowledgebase

(2009) Ursula Hinz et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Detection of site-specific glycosylation in proteins using flow cytometry

(2009) Deepak Jayakumar et al.   CYTOMETRY PART A

Glycoproteomics Analysis of Human Liver Tissue by Combination of Multiple Enzyme Digestion and Hydrazide Chemistry

(2009) Rui Chen et al.   JOURNAL OF PROTEOME RESEARCH

Rigorous determination of the stoichiometry of protein phosphorylation using mass spectrometry

(2009) Hannah Johnson et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

(2009) Hong Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

(2009) Bernd Wollscheid et al.   NATURE BIOTECHNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

BioJava: an open-source framework for bioinformatics

(2008) R. C. G. Holland et al.   BIOINFORMATICS

Prediction of glycosylation sites using random forests

(2008) Stephen E Hamby et al.   BMC BIOINFORMATICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

PSAIA - Protein Structure and Interaction Analyzer

(2008) Josip Mihel et al.   BMC STRUCTURAL BIOLOGY