Understanding the function and regulation of plant secondary metabolism through metabolomics approaches
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Understanding the function and regulation of plant secondary metabolism through metabolomics approaches
Authors
Keywords
Plant secondary metabolism, Metabolomic analysis, Functional genomics, Metabolic regulation
Journal
Theoretical and Experimental Plant Physiology
Volume -, Issue -, Pages -
Publisher
Springer Nature
Online
2018-11-29
DOI
10.1007/s40626-018-0126-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication
- (2018) Ilaria Piazza et al. CELL
- Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions
- (2018) Si Wu et al. Molecular Plant
- Metabolomics 20 years on: what have we learned and what hurdles remain?
- (2018) Saleh Alseekh et al. PLANT JOURNAL
- The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants
- (2018) Federico Scossa et al. PLANTA MEDICA
- The natural variance of the Arabidopsis floral secondary metabolites
- (2018) Takayuki Tohge et al. Scientific Data
- An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance
- (2017) Takayuki Tohge et al. MINI-REVIEWS IN MEDICINAL CHEMISTRY
- A Highly Specific Genome-Wide Association Study Integrated with Transcriptome Data Reveals the Contribution of Copy Number Variations to Specialized Metabolites in Arabidopsis thaliana Accessions
- (2017) Kazumasa Shirai et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants
- (2017) Jennifer H. Wisecaver et al. PLANT CELL
- Transcriptomic and metabolic analyses provide new insights into chilling injury in peach fruit
- (2017) Ke Wang et al. PLANT CELL AND ENVIRONMENT
- Drought-related secondary metabolites of barley (Hordeum vulgareL.) leaves and their metabolomic quantitative trait loci
- (2017) Anna Piasecka et al. PLANT JOURNAL
- Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard
- (2017) Jorge Gago et al. Plant Methods
- Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance
- (2017) Meng Peng et al. Nature Communications
- The Challenge to Translate OMICS Data to Whole Plant Physiology: The Context Matters
- (2017) Marcelo N. do Amaral et al. Frontiers in Plant Science
- From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
- (2017) Leonardo Perez de Souza et al. GigaScience
- System-wide detection of protein-small molecule complexes suggests extensive metabolite regulation in plants
- (2017) Daniel Veyel et al. Scientific Reports
- Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals
- (2016) Wei Chen et al. Nature Communications
- Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae
- (2016) Takayuki Tohge et al. Nature Communications
- Function of AP2/ERF Transcription Factors Involved in the Regulation of Specialized Metabolism in Ophiorrhiza pumila Revealed by Transcriptomics and Metabolomics
- (2016) Nirin Udomsom et al. Frontiers in Plant Science
- Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants
- (2016) F. Aarabi et al. Science Advances
- Effect of the environment on the secondary metabolic profile of Tithonia diversifolia: a model for environmental metabolomics of plants
- (2016) Bruno Leite Sampaio et al. Scientific Reports
- Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6
- (2015) Hirofumi Ishihara et al. JOURNAL OF EXPERIMENTAL BOTANY
- Spatiotemporal Distribution of Phenolamides and the Genetics of Natural Variation of Hydroxycinnamoyl Spermidine in Rice
- (2015) Xuekui Dong et al. Molecular Plant
- Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato
- (2015) Saleh Alseekh et al. PLANT CELL
- Detection of QTL for metabolic and agronomic traits in wheat with adjustments for variation at genetic loci that affect plant phenology
- (2015) Camilla B. Hill et al. PLANT SCIENCE
- Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis
- (2015) Monika Bielecka et al. Frontiers in Plant Science
- A Foundation for Provitamin A Biofortification of Maize: Genome-Wide Association and Genomic Prediction Models of Carotenoid Levels
- (2014) Brenda F. Owens et al. GENETICS
- Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade
- (2014) Kevin Schwahn et al. Journal of Integrative Plant Biology
- Systematic Structural Characterization of Metabolites inArabidopsisvia Candidate Substrate-Product Pair Networks
- (2014) Kris Morreel et al. PLANT CELL
- Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism
- (2014) Fumio Matsuda et al. PLANT JOURNAL
- Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights
- (2014) Weiwei Wen et al. Nature Communications
- Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics
- (2014) Chaoyang Hu et al. Scientific Reports
- Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions
- (2014) Takayuki Tohge et al. Frontiers in Plant Science
- The Spatial Organization of Metabolism Within the Plant Cell
- (2013) Lee J. Sweetlove et al. Annual Review of Plant Biology
- The evolution of phenylpropanoid metabolism in the green lineage
- (2013) Takayuki Tohge et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Metabolomics in plant environmental physiology
- (2013) Cecilia Brunetti et al. JOURNAL OF EXPERIMENTAL BOTANY
- A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics
- (2013) Wei Chen et al. Molecular Plant
- Metabolic Fluxes in an Illuminated Arabidopsis Rosette
- (2013) M. Szecowka et al. PLANT CELL
- Comprehensive Dissection of Spatiotemporal Metabolic Shifts in Primary, Secondary, and Lipid Metabolism during Developmental Senescence in Arabidopsis
- (2013) M. Watanabe et al. PLANT PHYSIOLOGY
- Genetic analysis of the metabolome exemplified using a rice population
- (2013) L. Gong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The use of metabolomics to dissect plant responses to abiotic stresses
- (2012) Toshihiro Obata et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- AtABCG29 Is a Monolignol Transporter Involved in Lignin Biosynthesis
- (2012) Santiago Alejandro et al. CURRENT BIOLOGY
- Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis
- (2012) Jean-Marc Routaboul et al. JOURNAL OF EXPERIMENTAL BOTANY
- Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis
- (2012) Fumio Matsuda et al. PLANT JOURNAL
- On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions Scientific Correspondence
- (2012) A. R. Fernie et al. PLANT PHYSIOLOGY
- Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize
- (2012) C. Riedelsheimer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
- (2011) Takayuki Tohge et al. Nature Protocols
- Characterization of metabolite quantitative trait loci and metabolic networks that control glucosinolate concentration in the seeds and leaves of Brassica napus
- (2011) Ji Feng et al. NEW PHYTOLOGIST
- Recent advances of metabolomics in plant biotechnology
- (2011) Yozo Okazaki et al. Plant Biotechnology Reports
- Recommendations for Reporting Metabolite Data
- (2011) A. R. Fernie et al. PLANT CELL
- Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development
- (2011) Johannes Rohrmann et al. PLANT JOURNAL
- High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions
- (2011) Camila Caldana et al. PLANT JOURNAL
- Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light
- (2011) Miyako Kusano et al. PLANT JOURNAL
- ‘Omics’ analyses of regulatory networks in plant abiotic stress responses
- (2010) Kaoru Urano et al. CURRENT OPINION IN PLANT BIOLOGY
- Targeted metabolomics in an intrusive weed, Rumex obtusifolius L., grown under different environmental conditions reveals alterations of organ related metabolite pathway
- (2010) Atsuko Miyagi et al. Metabolomics
- Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
- (2010) Susanna Atwell et al. NATURE
- Research on plant abiotic stress responses in the post-genome era: past, present and future
- (2010) Takashi Hirayama et al. PLANT JOURNAL
- Metabolomics for Functional Genomics, Systems Biology, and Biotechnology
- (2009) Kazuki Saito et al. Annual Review of Plant Biology
- Insights into plant metabolic networks from steady-state metabolic flux analysis
- (2009) Nicholas J. Kruger et al. BIOCHIMIE
- Engineering enzymes by ‘intelligent’ design
- (2009) Romas Kazlauskas et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Genetical metabolomics: closing in on phenotypes
- (2009) Joost JB Keurentjes CURRENT OPINION IN PLANT BIOLOGY
- Web-based resources for mass-spectrometry-based metabolomics: A user’s guide
- (2009) Takayuki Tohge et al. PHYTOCHEMISTRY
- Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches
- (2009) Fumio Matsuda et al. PLoS One
- Starch as a major integrator in the regulation of plant growth
- (2009) R. Sulpice et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic Flux Analysis in Plants: From Intelligent Design to Rational Engineering
- (2008) Igor G.L. Libourel et al. Annual Review of Plant Biology
- Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes
- (2008) Mami Yamazaki et al. FEBS Journal
- Intraspecfic variation in cold-temperature metabolic phenotypes of Arabidopsis lyrata ssp. petraea
- (2008) Matthew P. Davey et al. Metabolomics
- Widely Targeted Metabolomics Based on Large-Scale MS/MS Data for Elucidating Metabolite Accumulation Patterns in Plants
- (2008) Yuji Sawada et al. PLANT AND CELL PHYSIOLOGY
- Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis
- (2008) K. Yonekura-Sakakibara et al. PLANT CELL
- Quality control for plant metabolomics: reporting MSI-compliant studies
- (2008) Oliver Fiehn et al. PLANT JOURNAL
- Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics
- (2008) Kaoru Urano et al. PLANT JOURNAL
- MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites
- (2008) Fumio Matsuda et al. PLANT JOURNAL
- Metabolomics-assisted breeding: a viable option for crop improvement?
- (2008) Alisdair R. Fernie et al. TRENDS IN GENETICS
- High-energy collision-induced dissociation of phosphopeptides using a multi-turn tandem time-of-flight mass spectrometer ‘MULTUM-TOF/TOF’
- (2007) Shuichi Shimma et al. JOURNAL OF MASS SPECTROMETRY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started