Fluorogenic RNA Aptamers: A Nano-platform for Fabrication of Simple and Combinatorial Logic Gates

Aptamer-based biosensors and nanosensors for the detection of vascular endothelial growth factor (VEGF): A review

(2018) Sadegh Dehghani et al.   BIOSENSORS & BIOELECTRONICS

Structure and Composition Define Immunorecognition of Nucleic Acid Nanoparticles

(2018) Enping Hong et al.   NANO LETTERS

Development and characterization of Sindbis virus with encoded fluorescent RNA aptamer Spinach2 for imaging of replication and immune-mediated changes in intracellular viral RNA

(2017) Voraphoj Nilaratanakul et al.   JOURNAL OF GENERAL VIROLOGY

Versatile RNA tetra-U helix linking motif as a toolkit for nucleic acid nanotechnology

(2017) My N. Bui et al.   Nanomedicine-Nanotechnology Biology and Medicine

Functionally-interdependent shape-switching nanoparticles with controllable properties

(2017) Justin R. Halman et al.   NUCLEIC ACIDS RESEARCH

Programmable Nucleic Acid Based Polygons with Controlled Neuroimmunomodulatory Properties for Predictive QSAR Modeling

(2017) Morgan Brittany Johnson et al.   Small

A review: Aptamer-based analytical strategies using the nanomaterials for environmental and human monitoring of toxic heavy metals

(2017) Leila Farzin et al.   TALANTA

Fabrication of RNA 3D Nanoprisms for Loading and Protection of Small RNAs and Model Drugs

(2016) Emil F. Khisamutdinov et al.   ADVANCED MATERIALS

In Vitro and In Vivo Enzyme Activity Screening via RNA-Based Fluorescent Biosensors for S-Adenosyl-l-homocysteine (SAH)

(2016) Yichi Su et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs

(2016) Lorena G. Parlea et al.   METHODS

Fluorophore-binding RNA aptamers and their applications

(2016) Elena V. Dolgosheina et al.   Wiley Interdisciplinary Reviews-RNA

Spinach RNA aptamer detects lead(ii) with high selectivity

(2015) Saurja DasGupta et al.   CHEMICAL COMMUNICATIONS

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer inSalmonella

(2015) Kai Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Construction of a Fuzzy and Boolean Logic Gates Based on DNA

(2015) Reza M. Zadegan et al.   Small

Combining Spinach-tagged RNA and gene localization to image gene expression in live yeast

(2015) David Guet et al.   Nature Communications

RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking

(2014) Elena V. Dolgosheina et al.   ACS Chemical Biology

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

(2014) Grigory S. Filonov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A split intein T7 RNA polymerase for transcriptional AND-logic

(2014) Yolanda Schaerli et al.   NUCLEIC ACIDS RESEARCH

An introduction to recurrent nucleotide interactions in RNA

(2014) Blake A. Sweeney et al.   Wiley Interdisciplinary Reviews-RNA

RNA nanotechnology for computer design and in vivo computation

(2013) M. Qiu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Implementation of half adder and half subtractor with a simple and universal DNA-based platform

(2013) Shanling Xu et al.   NPG Asia Materials

Crystal structure of the 80S yeast ribosome

(2012) Lasse Jenner et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

DNA biomolecular-electronic encoder and decoder devices constructed by multiplex biosensors

(2012) Di Kang et al.   NPG Asia Materials

A Boost for the Emerging Field of RNA Nanotechnology

(2011) Girish C. Shukla et al.   ACS Nano

G-quadruplex DNAzyme based molecular catalytic beacon for label-free colorimetric logic gates

(2011) Jinbo Zhu et al.   BIOMATERIALS

Adaptive DNA-based materials for switching, sensing, and logic devices

(2011) Michael J. Campolongo et al.   JOURNAL OF MATERIALS CHEMISTRY

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

(2011) L. Qian et al.   SCIENCE

Multi-Input RNAi-Based Logic Circuit for Identification of Specific Cancer Cells

(2011) Z. Xie et al.   SCIENCE

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Molecular computing: DNA as a logic operator

(2010) Thomas Carell   NATURE

In vitro assembly of cubic RNA-based scaffolds designed in silico

(2010) Kirill A. Afonin et al.   Nature Nanotechnology

DNA computing circuits using libraries of DNAzyme subunits

(2010) Johann Elbaz et al.   Nature Nanotechnology

The emerging field of RNA nanotechnology

(2010) Peixuan Guo   Nature Nanotechnology

Logic Gates and Antisense DNA Devices Operating on a Translator Nucleic Acid Scaffold

(2009) Bella Shlyahovsky et al.   ACS Nano

Fluorophore Binding Aptamers as a Tool for RNA Visualization

(2009) Katja Eydeler et al.   BIOPHYSICAL JOURNAL

RNA-based computation in live cells

(2009) Yaakov Benenson   CURRENT OPINION IN BIOTECHNOLOGY

Biocomputers: from test tubes to live cells

(2009) Yaakov Benenson   Molecular BioSystems

Square-Shaped RNA Particles from Different RNA Folds

(2009) Isil Severcan et al.   NANO LETTERS

Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA

(2008) Shinsuke Sando et al.   CHEMICAL COMMUNICATIONS

CELL BIOLOGY: RNA Computing in a Living Cell

(2008) E. Shapiro et al.   SCIENCE