Fluorophore-binding RNA aptamers and their applications

Programmable RNA Tracking in Live Cells with CRISPR/Cas9

(2016) David A. Nelles et al.   CELL

Evolution and characterization of a benzylguanine-binding RNA aptamer

(2016) J. Xu et al.   CHEMICAL COMMUNICATIONS

Multi-target spectrally resolved fluorescence lifetime imaging microscopy

(2016) Thomas Niehörster et al.   NATURE METHODS

iSpinach: a fluorogenic RNA aptamer optimized forin vitroapplications

(2016) Alexis Autour et al.   NUCLEIC ACIDS RESEARCH

Structure and Mechanism of RNA Mimics of Green Fluorescent Protein

(2015) Mingxu You et al.   Annual Review of Biophysics

Genetically encoded tools for RNA imaging in living cells

(2015) Anna K. Rath et al.   CURRENT OPINION IN BIOTECHNOLOGY

MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system

(2015) J. F. Garcia et al.   RNA

Fluorescent RNA Labeling Using Self-Alkylating Ribozymes

(2014) Ashwani K. Sharma et al.   ACS Chemical Biology

RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking

(2014) Elena V. Dolgosheina et al.   ACS Chemical Biology

Live-Cell Imaging of Endogenous mRNAs with a Small Molecule

(2014) Shin-ichi Sato et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

(2014) Grigory S. Filonov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach

(2014) Wenjiao Song et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Advances in fluorescence labeling strategies for dynamic cellular imaging

(2014) Kevin M Dean et al.   Nature Chemical Biology

A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore

(2014) Hao Huang et al.   Nature Chemical Biology

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

(2014) Katherine Deigan Warner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Spinach molecular beacon triggered by strand displacement

(2014) Sanchita Bhadra et al.   RNA

Visualization of Dynamics of Single Endogenous mRNA Labeled in Live Mouse

(2014) H. Y. Park et al.   SCIENCE

Background free imaging of single mRNAs in live cells using split fluorescent proteins

(2014) Bin Wu et al.   Scientific Reports

Brightness Enhanced DNA FIT-Probes for Wash-Free RNA Imaging in Tissue

(2013) Felix Hövelmann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Targeted, Self-Delivered, and Photocontrolled Molecular Beacon for mRNA Detection in Living Cells

(2013) Liping Qiu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Imaging bacterial protein expression using genetically encoded RNA sensors

(2013) Wenjiao Song et al.   NATURE METHODS

A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA

(2013) Rita L Strack et al.   NATURE METHODS

Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria

(2013) Rita L Strack et al.   Nature Protocols

Imaging of mRNA–Protein Interactions in Live Cells Using Novel mCherry Trimolecular Fluorescence Complementation Systems

(2013) Juan Yin et al.   PLoS One

The Spinach RNA Aptamer as a Characterization Tool for Synthetic Biology

(2013) Georgios Pothoulakis et al.   ACS Synthetic Biology

Small-molecule fluorescent probes for specific RNA targets

(2011) Asako Murata et al.   CHEMICAL COMMUNICATIONS

Light-activatable molecular beacons with a caged loop sequence

(2011) Khashti Ballabh Joshi et al.   CHEMICAL COMMUNICATIONS

Imaging of RNA in live cells

(2011) Bruce A Armitage   CURRENT OPINION IN CHEMICAL BIOLOGY

A transgenic mouse for in vivo detection of endogenous labeled mRNA

(2011) Timothée Lionnet et al.   NATURE METHODS

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene

(2011) D. R. Larson et al.   SCIENCE

Sets of RNA Repeated Tags and Hybridization-Sensitive Fluorescent Probes for Distinct Images of RNA in a Living Cell

(2010) Takeshi Kubota et al.   PLoS One

A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes

(2010) B. Slobodin et al.   RNA

Fluorophore Binding Aptamers as a Tool for RNA Visualization

(2009) Katja Eydeler et al.   BIOPHYSICAL JOURNAL

Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green

(2009) Xing Zhang et al.   JOURNAL OF MOLECULAR RECOGNITION

Single molecule–sensitive probes for imaging RNA in live cells

(2009) Philip J Santangelo et al.   NATURE METHODS

Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA

(2008) Shinsuke Sando et al.   CHEMICAL COMMUNICATIONS

Synthesis of New Fluorogenic Cyanine Dyes and Incorporation into RNA Fluoromodules

(2008) Tudor P. Constantin et al.   ORGANIC LETTERS