Replication Study: Intestinal inflammation targets cancer-inducing activity of the microbiota

Characterization of the serum and liver proteomes in gut-microbiota-lacking mice

(2017) Yu-Tang Tung et al.   International Journal of Medical Sciences

Reproducibility of histopathological findings in experimental pathology of the mouse: a sorry tail

(2017) Jerrold M Ward et al.   LAB ANIMAL

A long journey to reproducible results

(2017) Gordon J. Lithgow et al.   NATURE

Pathologists’ diagnosis of invasive melanoma and melanocytic proliferations: observer accuracy and reproducibility study

(2017) Joann G Elmore et al.   BMJ-British Medical Journal

Pathologists’ diagnosis of invasive melanoma and melanocytic proliferations: observer accuracy and reproducibility study

(2017) Joann G Elmore et al.   BMJ-British Medical Journal

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

(2016) Kathleen Sprouffske et al.   BMC BIOINFORMATICS

Managing risks in drug discovery: reproducibility of published findings

(2016) Aimo Kannt et al.   NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY

Quality of Methods Reporting in Animal Models of Colitis

(2015) Michael Bramhall et al.   INFLAMMATORY BOWEL DISEASES

Registered report: Intestinal inflammation targets cancer-inducing activity of the microbiota

(2015) Kate Eaton et al.   eLife

Conducting Meta-Analyses inRwith themetaforPackage

(2015) Wolfgang Viechtbauer   Journal of Statistical Software

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bacterial genotoxin colibactin promotes colon tumour growth by inducing a senescence-associated secretory phenotype

(2014) Antony Cougnoux et al.   GUT

Animal Husbandry and Experimental Design

(2014) T. Nevalainen   ILAR JOURNAL

Reducing waste from incomplete or unusable reports of biomedical research

(2014) Paul Glasziou et al.   LANCET

Policy: NIH to balance sex in cell and animal studies

(2014) Janine A. Clayton et al.   NATURE

Olfactory exposure to males, including men, causes stress and related analgesia in rodents

(2014) Robert E Sorge et al.   NATURE METHODS

Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer

(2014) Janelle C. Arthur et al.   Nature Communications

Sorting Out the FACS: A Devil in the Details

(2014) William C. Hines et al.   Cell Reports

Two Years Later: Journals Are Not Yet Enforcing the ARRIVE Guidelines on Reporting Standards for Pre-Clinical Animal Studies

(2014) David Baker et al.   PLOS BIOLOGY

An open investigation of the reproducibility of cancer biology research

(2014) Timothy M Errington et al.   eLife

Colonization of the Human Gut by E. coli and Colorectal Cancer Risk

(2013) M. Bonnet et al.   CLINICAL CANCER RESEARCH

Pathology of Rodent Models of Intestinal Cancer: Progress Report and Recommendations

(2013) Mary Kay Washington et al.   GASTROENTEROLOGY

Baseline tumor growth and immune control in laboratory mice are significantly influenced by subthermoneutral housing temperature

(2013) K. M. Kokolus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Principles for Valid Histopathologic Scoring in Research

(2013) K. N. Gibson-Corley et al.   VETERINARY PATHOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Induction of Colonic Aberrant Crypts in Mice by Feeding Apparent N-Nitroso Compounds Derived From Hot Dogs

(2012) Michael E. Davis et al.   NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Interleukin-10 Ablation Promotes Tumor Development, Growth, and Metastasis

(2011) T. Tanikawa et al.   CANCER RESEARCH

Animal Models of Colitis-Associated Carcinogenesis

(2011) Manasa Kanneganti et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Inbred mouse strains and genetic stability: a review

(2010) J. Casellas   Animal

Ulcerative Typhlocolitis Associated With Helicobacter mastomyrinus in Telomerase-Deficient Mice

(2010) K. A. Eaton et al.   VETERINARY PATHOLOGY

Improving Bioscience Research Reporting: The ARRIVE Guidelines for Reporting Animal Research

(2010) Carol Kilkenny et al.   PLOS BIOLOGY

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The consequences of genetic drift for bacterial genome complexity

(2009) C.-H. Kuo et al.   GENOME RESEARCH