Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts

Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2014) Zhongtao Zhao et al.   BMC GENOMICS

The Endo-Arabinanase BcAra1 Is a Novel Host-Specific Virulence Factor of the Necrotic Fungal Phytopathogen Botrytis cinerea

(2014) Majse Nafisi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

Recent insights into copper-containing lytic polysaccharide mono-oxygenases

(2013) Glyn R Hemsworth et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Transcriptome Profiling of Botrytis cinerea Conidial Germination Reveals Upregulation of Infection-Related Genes during the Prepenetration Stage

(2013) Michaela Leroch et al.   EUKARYOTIC CELL

Genome-wide analysis of pectate-induced gene expression in Botrytis cinerea : Identification and functional analysis of putative d -galacturonate transporters

(2013) Lisha Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Transgenic expression of pectin methylesterase inhibitors limits tobamovirus spread in tobacco and Arabidopsis

(2013) Vincenzo Lionetti et al.   MOLECULAR PLANT PATHOLOGY

Functional analysis of endo-1,4-β-glucanases in response toBotrytis cinereaandPseudomonas syringaereveals their involvement in plant-pathogen interactions

(2013) I. Finiti et al.   PLANT BIOLOGY

RNAseq-based transcriptome analysis ofLactuca sativainfected by the fungal necrotrophBotrytis cinerea

(2013) KAAT DE CREMER et al.   PLANT CELL AND ENVIRONMENT

Fungal Endopolygalacturonases Are Recognized as Microbe-Associated Molecular Patterns by the Arabidopsis Receptor-Like Protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1

(2013) L. Zhang et al.   PLANT PHYSIOLOGY

Cell wall composition of tomato fruit changes during development and inhibition of vesicle trafficking is associated with reduced pectin levels and reduced softening

(2013) Daniel Lunn et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Hemicellulose biosynthesis

(2013) Markus Pauly et al.   PLANTA

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Tomato transcriptome and mutant analyses suggest a role for plant stress hormones in the interaction between fruit and Botrytis cinerea

(2013) Barbara Blanco-Ulate et al.   Frontiers in Plant Science

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

(2012) Hitoshi Suzuki et al.   BMC GENOMICS

Methyl esterification of pectin plays a role during plant–pathogen interactions and affects plant resistance to diseases

(2012) Vincenzo Lionetti et al.   JOURNAL OF PLANT PHYSIOLOGY

Proteomic Analysis of Ripening Tomato Fruit Infected by Botrytis cinerea

(2012) Punit Shah et al.   JOURNAL OF PROTEOME RESEARCH

Exploring Pathogenic Mechanisms of Botrytis cinerea Secretome under Different Ambient pH Based on Comparative Proteomic Analysis

(2012) Boqiang Li et al.   JOURNAL OF PROTEOME RESEARCH

Botrytis cinereamutants deficient ind-galacturonic acid catabolism have a perturbed virulence onNicotiana benthamianaandArabidopsis, but not on tomato

(2012) Lisha Zhang et al.   MOLECULAR PLANT PATHOLOGY

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for Flowering

(2012) Andrew Chen et al.   PLoS Genetics

The Plant Cell Wall: A Dynamic Barrier Against Pathogen Invasion

(2012) William Underwood   Frontiers in Plant Science

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

(2011) Brian C King et al.   Biotechnology for Biofuels

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ectopic Expression of a Pectin Methyl Esterase Inhibitor Increases Pectin Methyl Esterification and Limits Fungal Diseases in Wheat

(2011) Chiara Volpi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

(2011) Cornelius Schmidtke et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

The Botrytis cinerea xylanase Xyn11A contributes to virulence with its necrotizing activity, not with its catalytic activity

(2010) Judith Noda et al.   BMC PLANT BIOLOGY

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Modification of cell wall properties in lettuce improves shelf life

(2010) C. Wagstaff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Pectin Methylesterase Is Induced inArabidopsisupon Infection and Is Necessary for a Successful Colonization by Necrotrophic Pathogens

(2010) Alessandro Raiola et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The XTH Gene Family: An Update on Enzyme Structure, Function, and Phylogeny in Xyloglucan Remodeling

(2010) J. M. Eklof et al.   PLANT PHYSIOLOGY

Abscisic Acid Deficiency Causes Changes in Cuticle Permeability and Pectin Composition That Influence Tomato Resistance to Botrytis cinerea

(2010) K. Curvers et al.   PLANT PHYSIOLOGY

Plant Cell Walls

(2010) K. Keegstra   PLANT PHYSIOLOGY

The Biochemistry and Structural Biology of Plant Cell Wall Deconstruction

(2010) H. J. Gilbert   PLANT PHYSIOLOGY

2-DE proteomic approach to the Botrytis cinerea secretome induced with different carbon sources and plant-based elicitors

(2010) Francisco Javier Fernández-Acero et al.   PROTEOMICS

The Botrytis cinerea early secretome

(2010) José J. Espino et al.   PROTEOMICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Host–pathogen warfare at the plant cell wall

(2009) Kian Hématy et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparative Proteomic Analysis ofBotrytis cinereaSecretome

(2009) Punit Shah et al.   JOURNAL OF PROTEOME RESEARCH

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Ripening-Regulated Susceptibility of Tomato Fruit to Botrytis cinerea Requires NOR But Not RIN or Ethylene

(2009) D. Cantu et al.   PLANT PHYSIOLOGY

A proteomic study of pectin-degrading enzymes secreted by Botrytis cinerea grown in liquid culture

(2009) Punit Shah et al.   PROTEOMICS

Pectin, a versatile polysaccharide present in plant cell walls

(2009) Alphons G. J. Voragen et al.   STRUCTURAL CHEMISTRY

Covalently linked wall proteins in ascomycetous fungi

(2009) Frans M. Klis et al.   YEAST

Characterization of the cell wall of the ubiquitous plant pathogen Botrytis cinerea

(2009) Dario Cantu et al.  

Pectin structure and biosynthesis

(2008) D MOHNEN   CURRENT OPINION IN PLANT BIOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Ethylene and ripening-regulated expression and function of fruit cell wall modifying proteins

(2008) Alan B. Bennett et al.   PLANT SCIENCE

Pepper pectin methylesterase inhibitor protein CaPMEI1 is required for antifungal activity, basal disease resistance and abiotic stress tolerance

(2008) Soo Hyun An et al.   PLANTA

The intersection between cell wall disassembly, ripening, and fruit susceptibility to Botrytis cinerea

(2008) D. Cantu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strangers in the matrix: plant cell walls and pathogen susceptibility

(2008) Dario Cantu et al.   TRENDS IN PLANT SCIENCE