Genome sequence of the cauliflower mushroom Sparassis crispa (Hanabiratake) and its association with beneficial usage

De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses

(2018) Donglai Xiao et al.   Canadian Journal of Infectious Diseases & Medical Microbiology

Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters

(2018) Abhishek Kumar et al.   Scientific Reports

New Aromatic Compounds from the Fruiting Body of Sparassis crispa (Wulf.) and Their Inhibitory Activities on Proprotein Convertase Subtilisin/Kexin Type 9 mRNA Expression

(2017) Sunghee Bang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The potential health effects of dietary phytoestrogens

(2016) Ivonne M C M Rietjens et al.   BRITISH JOURNAL OF PHARMACOLOGY

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation

(2016) Lianfu Chen et al.   PLoS One

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

(2015) Alison C Testa et al.   BMC GENOMICS

Cloning of the A Mating-Type Locus from Lepista nuda and Characterization of Its Genetic Structure

(2015) Chengbo Rong et al.   CURRENT MICROBIOLOGY

Antioxidant Capacity and Total Phenolics Content of the Fruiting Bodies and Submerged Cultured Mycelia of Sixteen Higher Basidiomycetes Mushrooms from India

(2015) Rajendra Prasad et al.   INTERNATIONAL JOURNAL OF MEDICINAL MUSHROOMS

Hypocholesterolemic Effects of the Cauliflower Culinary-Medicinal Mushroom, Sparassis crispa (Higher Basidiomycetes), in Diet-Induced Hypercholesterolemic Rats

(2015) Ki Bae Hong et al.   INTERNATIONAL JOURNAL OF MEDICINAL MUSHROOMS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

(2015) Abhishek Kumar et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

DNA microarray-based gene expression profiling of estrogenic chemicals

(2014) Ryoiti Kiyama et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Whole Genome and Global Gene Expression Analyses of the Model Mushroom Flammulina velutipes Reveal a High Capacity for Lignocellulose Degradation

(2014) Young-Jin Park et al.   PLoS One

Cloning and Molecular Characterization of β-1,3-Glucan Synthase from Sparassis crispa

(2014) Yun Hui Yang et al.   MYCOBIOLOGY

Medicinal mushroom science: Current perspectives, advances, evidences, and challenges

(2014) SolomonP Wasser   Biomedical Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sequencing and Comparative Analysis of the Straw Mushroom (Volvariella volvacea) Genome

(2013) Dapeng Bao et al.   PLoS One

Natural Products and Biological Activity of the Pharmacologically Active Cauliflower MushroomSparassis crispa

(2013) Takashi Kimura   Biomed Research International

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Estrogenic activity of bio-degradation products of C-heavy oil revealed by gene-expression profiling using an oligo-DNA microarray system

(2012) Yun Zhu et al.   ENVIRONMENTAL POLLUTION

Sparassis crispa suppresses mast cell-mediated allergic inflammation: Role of calcium, mitogen-activated protein kinase and nuclear factor-κB

(2012) HUI-HUN KIM et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Brefeldin A Is an Estrogenic, Erk1/2-Activating Component in the Extract of Agaricus blazei Mycelia

(2012) Sijun Dong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Anticancer properties of polysaccharides isolated from fungi of the Basidiomycetes class

(2012) Marta Lemieszek et al.   Wspolczesna Onkologia-Contemporary Oncology

Genome sequence of the model medicinal mushroom Ganoderma lucidum

(2012) Shilin Chen et al.   Nature Communications

Properties and Potential Applications of the Culinary-Medicinal Cauliflower Mushroom, Sparassis crispa Wulf.:Fr. (Aphyllophoromycetideae): A Review

(2011) Gayathri Chandrasekaran et al.   INTERNATIONAL JOURNAL OF MEDICINAL MUSHROOMS

Estrogen-like activity and dual roles in cell signaling of an Agaricus blazei Murrill mycelia-dikaryon extract

(2011) Sijun Dong et al.   MICROBIOLOGICAL RESEARCH

Chemistry, physico-chemistry and applications linked to biological activities of β-glucans

(2011) Laura Barsanti et al.   NATURAL PRODUCT REPORTS

Novel Phthalide Compounds from Sparassis crispa (Hanabiratake), Hanabiratakelide A—C, Exhibiting Anti-cancer Related Activity

(2010) Kazuko Yoshikawa et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Multiple Functional Domains of the Yeast l,3- -Glucan Synthase Subunit Fks1p Revealed by Quantitative Phenotypic Analysis of Temperature-Sensitive Mutants

(2010) H. Okada et al.   GENETICS

Genome sequence of the model mushroom Schizophyllum commune

(2010) Robin A Ohm et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mushroom as a potential source of prebiotics: a review

(2009) F.M.N.A. Aida et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY