De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

(2015) Abhishek Kumar et al.   PLoS One

Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2015) Ruibang Luo et al.   GigaScience

Genome-Wide Annotation and Comparative Analysis of Cytochrome P450 Monooxygenases in Basidiomycete Biotrophic Plant Pathogens

(2015) Lehlohonolo Benedict Qhanya et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties

(2014) Hui-Yeng Y Yap et al.   BMC GENOMICS

Prevalence of transcription factors in ascomycete and basidiomycete fungi

(2014) Richard B Todd et al.   BMC GENOMICS

Quartet-based methods to reconstruct phylogenetic networks

(2014) Jialiang Yang et al.   BMC Systems Biology

Genomics of wood-degrading fungi

(2014) Robin A. Ohm et al.   FUNGAL GENETICS AND BIOLOGY

Biosynthesis of fungal indole alkaloids

(2014) Wei Xu et al.   NATURAL PRODUCT REPORTS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Identification of a Fungi-Specific Lineage of Protein Kinases Closely Related to Tyrosine Kinases

(2014) Zhongtao Zhao et al.   PLoS One

Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi

(2014) Khajamohiddin Syed et al.   PLoS One

Whole Genome and Global Gene Expression Analyses of the Model Mushroom Flammulina velutipes Reveal a High Capacity for Lignocellulose Degradation

(2014) Young-Jin Park et al.   PLoS One

Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development

(2014) M.-Y. J. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cloning and Molecular Characterization of β-1,3-Glucan Synthase from Sparassis crispa

(2014) Yun Hui Yang et al.   MYCOBIOLOGY

Genome-wide survey of repetitive DNA elements in the button mushroom Agaricus bisporus

(2013) Marie Foulongne-Oriol et al.   FUNGAL GENETICS AND BIOLOGY

Quartet-Net: A Quartet-Based Method to Reconstruct Phylogenetic Networks

(2013) Jialiang Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora

(2013) Khajamohiddin Syed et al.   MYCOLOGIA

Phylogenetic and phylogenomic overview of the Polyporales

(2013) Manfred Binder et al.   MYCOLOGIA

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sequencing and Comparative Analysis of the Straw Mushroom (Volvariella volvacea) Genome

(2013) Dapeng Bao et al.   PLoS One

Conservation analysis of class-specific positions in cytochrome P450 monooxygenases: Functional and structural relevance

(2013) Łukasz Gricman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Natural Products and Biological Activity of the Pharmacologically Active Cauliflower MushroomSparassis crispa

(2013) Takashi Kimura   Biomed Research International

Short-Read Sequencing for Genomic Analysis of the Brown Rot Fungus Fibroporia radiculosa

(2012) Juliet D. Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

(2012) Hitoshi Suzuki et al.   BMC GENOMICS

P450 monooxygenases (P450ome) of the model white rot fungusPhanerochaete chrysosporium

(2012) Khajamohiddin Syed et al.   CRITICAL REVIEWS IN MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Genome of Ganderma lucidum Provide Insights into Triterpense Biosynthesis and Wood Degradation

(2012) Dongbo Liu et al.   PLoS One

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Genome sequence of the model medicinal mushroom Ganoderma lucidum

(2012) Shilin Chen et al.   Nature Communications

Ganoderma lucidum Polysaccharides: Immunomodulation and Potential Anti-Tumor Activities

(2011) Zengtao Xu et al.   AMERICAN JOURNAL OF CHINESE MEDICINE

Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation

(2011) Robin A. Ohm et al.   MOLECULAR MICROBIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom

(2011) Feng Chen et al.   PLANT JOURNAL

Novel Phthalide Compounds from Sparassis crispa (Hanabiratake), Hanabiratakelide A—C, Exhibiting Anti-cancer Related Activity

(2010) Kazuko Yoshikawa et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

The CAZyome of Phytophthora spp.: A comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora

(2010) Manuel D Ospina-Giraldo et al.   BMC GENOMICS

Comparative analysis of fungal protein kinases and associated domains

(2010) Idit Kosti et al.   BMC GENOMICS

Beneficial effect of Sparassis crispa on stroke through activation of Akt/eNOS pathway in brain of SHRSP

(2010) Hisae Yoshitomi et al.   Journal of Natural Medicines

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeting the Kinome II

(2009) Brian A. Hemmings et al.   CURRENT OPINION IN CELL BIOLOGY

Effects of Hanabiratake (Sparassis crispa) on Allergic Rhinitis in OVA-Sensitized Mice

(2009) Masafumi YAO et al.   FOOD SCIENCE AND TECHNOLOGY RESEARCH

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of medicinal mushroom (Sparassis crispa) on wound healing in streptozotocin-induced diabetic rats

(2008) A.-Hon Kwon et al.   AMERICAN JOURNAL OF SURGERY

Run Probabilities of Seed-Like Patterns and Identifying Good Transition Seeds

(2008) Jialiang Yang et al.   JOURNAL OF COMPUTATIONAL BIOLOGY