Integrated mRNA, sRNA, and degradome sequencing reveal oilseed rape complex responses to Sclerotinia sclerotiorum (Lib.) infection

Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum

(2016) Hong Zhang et al.   BMC GENOMICS

A global study of transcriptome dynamics in canola (Brassica napus L.) responsive to Sclerotinia sclerotiorum infection using RNA-Seq

(2016) Raj Kumar Joshi et al.   GENE

Microsatellite markers used for genome-wide association mapping of partial resistance to Sclerotinia sclerotiorum in a world collection of Brassica napus

(2016) Sanjaya Gyawali et al.   MOLECULAR BREEDING

Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes

(2016) Bilgin Candar-Cakir et al.   PLANT BIOTECHNOLOGY JOURNAL

Tight regulation of the interaction between Brassica napus and Sclerotinia sclerotiorum at the microRNA level

(2016) Jia-Yi Cao et al.   PLANT MOLECULAR BIOLOGY

Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses

(2016) Hongju Jian et al.   Frontiers in Plant Science

RNA-seq Transcriptome Response of Flax (Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini

(2016) Leonardo Galindo-González et al.   Frontiers in Plant Science

Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots

(2016) Miaomiao Xing et al.   PLoS One

Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus

(2016) Jian Wu et al.   Scientific Reports

Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

(2015) Nicholas A. Mueth et al.   BMC GENOMICS

Changes in gene expression profiles as they relate to the adult plant leaf rust resistance in the wheat cv. Toropi

(2015) Alice Casassola et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Genome-wide association analysis and differential expression analysis of resistance toSclerotiniastem rot inBrassica napus

(2015) Lijuan Wei et al.   PLANT BIOTECHNOLOGY JOURNAL

Altered Gene Expression Profiles of Wheat Genotypes against Fusarium Head Blight

(2015) Ayumi Kosaka et al.   Toxins

Secondary metabolites in fungus-plant interactions

(2015) Tünde Pusztahelyi et al.   Frontiers in Plant Science

Plant–Pathogen Interaction-Related MicroRNAs and Their Targets Provide Indicators of Phytoplasma Infection in Paulownia tomentosa × Paulownia fortunei

(2015) Guoqiang Fan et al.   PLoS One

Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes

(2014) Doumit Camilios-Neto et al.   BMC GENOMICS

Quantitative trait loci analyses for resistance to Sclerotinia sclerotiorum and flowering time in Brassica napus

(2014) Dayong Wei et al.   MOLECULAR BREEDING

Overexpression ofBnWRKY33in oilseed rape enhances resistance toSclerotinia sclerotiorum

(2014) Zheng Wang et al.   MOLECULAR PLANT PATHOLOGY

Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungusVerticillium longisporumusingBrassicaAA (Brassica rapa) and CC (Brassica oleracea) as reference genomes

(2014) Dan Shen et al.   NEW PHYTOLOGIST

Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers ofGossypium barbadense

(2014) Nian Liu et al.   PLANT JOURNAL

Plant hormones in defense response of Brassica napus to Sclerotinia sclerotiorum – Reassessing the role of salicylic acid in the interaction with a necrotroph

(2014) Miroslava Nováková et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Global View of Transcriptome Dynamics during Sporisorium scitamineum Challenge in Sugarcane by RNA-seq

(2014) Youxiong Que et al.   PLoS One

Overexpression of AtWRKY28 and AtWRKY75 in Arabidopsis enhances resistance to oxalic acid and Sclerotinia sclerotiorum

(2013) Xiaoting Chen et al.   PLANT CELL REPORTS

Heterotrimeric G Proteins Serve as a Converging Point in Plant Defense Signaling Activated by Multiple Receptor-Like Kinases

(2013) J. Liu et al.   PLANT PHYSIOLOGY

Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly

(2013) Takayuki Yazawa et al.   PLoS One

Identification of QTLs for Resistance to Sclerotinia Stem Rot and BnaC.IGMT5.a as a Candidate Gene of the Major Resistant QTL SRC6 in Brassica napus

(2013) Jian Wu et al.   PLoS One

A High-Density SNP Map for Accurate Mapping of Seed Fibre QTL in Brassica napus L

(2013) Liezhao Liu et al.   PLoS One

MYB transcription factor genes as regulators for plant responses: an overview

(2013) Supriya Ambawat et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis

(2012) Miao Y Xu et al.   BMC GENOMICS

miRNA arm selection and isomiR distribution in gastric cancer

(2012) Sung-Chou Li et al.   BMC GENOMICS

Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium

(2012) Zhao Sheng Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Members of the germin-like protein family in Brassica napus are candidates for the initiation of an oxidative burst that impedes pathogenesis of Sclerotinia sclerotiorum

(2012) Steffen Rietz et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Expression Profiling of Cucumis sativus in Response to Infection by Pseudoperonospora cubensis

(2012) Bishwo N. Adhikari et al.   PLoS One

Identifying Conserved and Novel MicroRNAs in Developing Seeds of Brassica napus Using Deep Sequencing

(2012) Ana Paula Körbes et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

(2011) Liwen Wang et al.   BMC GENOMICS

The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates

(2011) Alexandre Robert-Seilaniantz et al.   PLANT JOURNAL

Small RNA Profiling in Two Brassica napus Cultivars Identifies MicroRNAs with Oil Production- and Development-Correlated Expression and New Small RNA Classes

(2011) Y.-T. Zhao et al.   PLANT PHYSIOLOGY

The infection processes of Sclerotinia sclerotiorum in cotyledon tissue of a resistant and a susceptible genotype of Brassica napus

(2010) Harsh Garg et al.   ANNALS OF BOTANY

A set of miRNAs from Brassica napus in response to sulphate deficiency and cadmium stress

(2010) Si Qi Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity

(2010) Y. Li et al.   PLANT PHYSIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Mapping of QTLs detected in a Brassica napus DH population for resistance to Sclerotinia sclerotiorum in multiple environments

(2009) Xiangrui Yin et al.   EUPHYTICA

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

(2009) Qing Liu et al.   FEBS LETTERS

Engineering Flax with the GT Family 1 Solanum sogarandinum Glycosyltransferase SsGT1 Confers Increased Resistance to Fusarium Infection

(2009) Katarzyna Lorenc-Kukuła et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Patterns of differential gene expression inBrassica napuscultivars infected withSclerotinia sclerotiorum

(2009) JIANWEI ZHAO et al.   MOLECULAR PLANT PATHOLOGY

Overexpression of Brassica napus MPK4 Enhances Resistance to Sclerotinia sclerotiorum in Oilseed Rape

(2009) Zheng Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Plant plasma membrane water channels conduct the signalling molecule H2O2

(2008) Marek Dynowski et al.   BIOCHEMICAL JOURNAL

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR classRgene-derived novel miRNA in Brassica

(2008) Xiang-Feng He et al.   FEBS LETTERS

Regulation and Function of Arabidopsis JASMONATE ZIM-Domain Genes in Response to Wounding and Herbivory

(2008) H. S. Chung et al.   PLANT PHYSIOLOGY

Structure and function of enzymes involved in the biosynthesis of phenylpropanoids

(2008) J.-L. Ferrer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Plant pathogenesis-related (PR) proteins: A focus on PR peptides

(2008) Jan Sels et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY