Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
Authors
Keywords
-
Journal
Scientific Reports
Volume 8, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-01-25
DOI
10.1038/s41598-018-20366-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Suitability of PCR primers for characterizing invertebrate communities from soil and leaf litter targeting metazoan 18S ribosomal or cytochrome oxidase I (COI) genes
- (2017) Dean J. Horton et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Ecosystem services of the soil food web after long-term application of agricultural management practices
- (2017) Xiaoke Zhang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Are we ready to detect nematode diversity by next generation sequencing?
- (2017) Thomas Peham et al. Ecology and Evolution
- Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities
- (2017) Olivier Laroche et al. PeerJ
- Influence of long-term corn–soybean crop sequences on soil ecology as indicated by the nematode community
- (2016) Zane J. Grabau et al. APPLIED SOIL ECOLOGY
- Imagining Sisyphus happy: DNA barcoding and the unnamed majority
- (2016) Mark Blaxter PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA
- (2016) Lucie Zinger et al. SOIL BIOLOGY & BIOCHEMISTRY
- Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
- (2016) Paul Carini et al. Nature Microbiology
- Microbial rRNA:rDNA gene ratios may be unexpectedly low due to extracellular DNA preservation in soils
- (2015) Glade Dlott et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Give soils their due
- (2015) D. H. Wall et al. SCIENCE
- Conservation tillage positively influences the microflora and microfauna in the black soil of Northeast China
- (2015) Shixiu Zhang et al. SOIL & TILLAGE RESEARCH
- Unearthing the role of biological diversity in soil health
- (2015) Howard Ferris et al. SOIL BIOLOGY & BIOCHEMISTRY
- High-throughput sequencing of nematode communities from total soil DNA extractions
- (2015) Rumakanta Sapkota et al. BMC ECOLOGY
- Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons
- (2015) Magdalena Guardiola et al. PLoS One
- Linking operational clustered taxonomic units (OCTUs) from parallel ultra sequencing (PUS) to nematode species
- (2015) D. L. Porazinska et al. ZOOTAXA
- The Bio-Community Perl toolkit for microbial ecology
- (2014) Florent E. Angly et al. BIOINFORMATICS
- Intensive agriculture reduces soil biodiversity across Europe
- (2014) Maria A. Tsiafouli et al. GLOBAL CHANGE BIOLOGY
- Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally
- (2014) K. S. Ramirez et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Impact of coleopteran-active Bt corn on non-target nematode communities in soil and decomposing corn roots
- (2014) Deborah A. Neher et al. SOIL BIOLOGY & BIOCHEMISTRY
- Climate and litter quality differently modulate the effects of soil fauna on litter decomposition across biomes
- (2013) Pablo García-Palacios et al. ECOLOGY LETTERS
- High-throughput amplicon sequencing of rRNA genes requires a copy number correction to accurately reflect the effects of management practices on soil nematode community structure
- (2013) B. J. Darby et al. MOLECULAR ECOLOGY
- Intra-Genomic Variation in the Ribosomal Repeats of Nematodes
- (2013) Holly M. Bik et al. PLoS One
- Soil food web properties explain ecosystem services across European land use systems
- (2013) F. T. de Vries et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unlocking the potential of metagenomics through replicated experimental design
- (2012) Rob Knight et al. NATURE BIOTECHNOLOGY
- Nematode Spatial and Ecological Patterns from Tropical and Temperate Rainforests
- (2012) Dorota L. Porazinska et al. PLoS One
- The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
- (2012) C. Q. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bioindication potential of using molecular characterisation of the nematode community: Response to soil tillage
- (2011) B.S. Griffiths et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments
- (2011) HOLLY M. BIK et al. MOLECULAR ECOLOGY
- Mineralizable soil nitrogen and labile soil organic matter in diverse long-term cropping systems
- (2011) John T. Spargo et al. NUTRIENT CYCLING IN AGROECOSYSTEMS
- Molecular study of worldwide distribution and diversity of soil animals
- (2011) T. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effects of organic amendment and tillage on soil microorganisms and microfauna
- (2010) Amy M. Treonis et al. APPLIED SOIL ECOLOGY
- Soil biota community structure and abundance under agricultural intensification and extensification
- (2010) Maria B. Postma-Blaauw et al. ECOLOGY
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- Subplots facilitate assessment of corn yield losses from weed competition in a long-term systems experiment
- (2009) John R. Teasdale et al. Agronomy for Sustainable Development
- Mechanisms of nematode suppression by organic soil amendments—A review
- (2009) Y. Oka APPLIED SOIL ECOLOGY
- Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity
- (2009) DOROTA L. PORAZINSKA et al. Molecular Ecology Resources
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now